Variant report

Variant	rs573985378
Chromosome Location	chr12:56032981-56032982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559001	chr12:55507465-56057708	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv948625	chr12:55838718-56118833	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3490751	chr12:56030785-56035633	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3490754	chr12:56031235-56035533	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3490750	chr12:56031555-56035542	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3496864	chr12:56031790-56034633	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3490748	chr12:56031798-56034621	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3490749	chr12:56031808-56034558	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3496875	chr12:56031816-56034632	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3490753	chr12:56031829-56034595	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3490747	chr12:56031863-56034561	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv18086	chr12:56031874-56034678	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3490755	chr12:56031875-56034552	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3496886	chr12:56031875-56034552	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56023200-56036800	Weak transcription	Spleen	Spleen
2	chr12:56025800-56035200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr12:56030800-56035800	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr12:56031000-56033800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr12:56031000-56034400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr12:56031000-56035200	Weak transcription	Left Ventricle	heart
7	chr12:56032200-56036200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr12:56032600-56036000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr12:56032800-56040000	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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