Variant report

Variant	rs57400569
Chromosome Location	chr4:89752276-89752277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10011267	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10024506	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10028284	0.83[ASN][1000 genomes]
rs12640274	0.81[EUR][1000 genomes]
rs13115763	0.83[ASN][1000 genomes]
rs13149209	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2085600	0.81[EUR][1000 genomes]
rs28514678	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35019968	0.83[ASN][1000 genomes]
rs4425336	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59473955	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs60955950	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs71609539	0.83[ASN][1000 genomes]
rs73842249	0.81[ASN][1000 genomes]
rs7660000	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89745000-89764200	Weak transcription	Ovary	ovary
2	chr4:89745000-89764800	Weak transcription	Pancreas	Pancrea
3	chr4:89745000-89770800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:89745000-89775000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:89745200-89756600	Weak transcription	Placenta	Placenta
6	chr4:89745200-89776200	Weak transcription	Aorta	Aorta
7	chr4:89745400-89754200	Weak transcription	Fetal Kidney	kidney
8	chr4:89745400-89755200	Weak transcription	NHLF	lung
9	chr4:89745400-89759000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:89745600-89754200	Weak transcription	Fetal Lung	lung
11	chr4:89747400-89752600	Enhancers	Adipose Nuclei	Adipose
12	chr4:89748400-89752800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:89749000-89769600	Weak transcription	K562	blood
14	chr4:89749400-89752400	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:89750000-89752600	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr4:89750400-89752600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:89750400-89752800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:89751000-89752600	Enhancers	Fetal Muscle Leg	muscle
19	chr4:89751800-89752600	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr4:89751800-89752800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr4:89752000-89763600	Weak transcription	Small Intestine	intestine
22	chr4:89752000-89764000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr4:89752000-89778800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr4:89752200-89752600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:89752200-89752600	Enhancers	Fetal Intestine Small	intestine
26	chr4:89752200-89752600	Enhancers	Psoas Muscle	Psoas
27	chr4:89752200-89752600	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr4:89752200-89752600	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr4:89752200-89752600	Enhancers	Skeletal Muscle Female	skeletal muscle

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