Variant report

Variant	rs574022519
Chromosome Location	chr3:99628867-99628868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99627181..99629035-chr3:99632871..99635218,2	MCF-7	breast:
2	chr3:99594614..99596231-chr3:99626754..99629032,2	MCF-7	breast:
3	chr3:99626736..99629187-chr3:99773539..99775564,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168386	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv3324951	chr3:99626762-99631260	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3505014	chr3:99628037-99630635	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv988265	chr3:99628303-99630006	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv3358022	chr3:99628309-99630115	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3505011	chr3:99628654-99629722	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3462209	chr3:99628674-99629734	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3505015	chr3:99628684-99629736	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3505013	chr3:99628692-99629666	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3462205	chr3:99628696-99629710	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv3462207	chr3:99628705-99629701	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3462206	chr3:99628716-99629653	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv3505012	chr3:99628729-99629675	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv2945	chr3:99628742-99629688	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv987776	chr3:99628782-99629630	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	esv3462210	chr3:99628783-99629632	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	esv3505016	chr3:99628783-99629632	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	esv12709	chr3:99628795-99629618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	esv998785	chr3:99628801-99629604	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	nsv822195	chr3:99628801-99629604	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	nsv822196	chr3:99628801-99629644	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	nsv591145	chr3:99628822-99629445	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
24	nsv591146	chr3:99628822-99629567	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99600800-99638600	Weak transcription	Left Ventricle	heart
2	chr3:99604600-99648200	Weak transcription	Primary T cells from cord blood	blood
3	chr3:99616000-99631200	Weak transcription	Primary B cells from cord blood	blood
4	chr3:99619600-99644400	Weak transcription	Right Ventricle	heart
5	chr3:99620000-99629800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:99620000-99638600	Weak transcription	Small Intestine	intestine
7	chr3:99621200-99638600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:99621400-99629800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:99623000-99629600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:99623200-99629400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:99625000-99632800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:99625000-99639400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:99626200-99630000	Enhancers	HepG2	liver
14	chr3:99626600-99629000	Enhancers	Liver	Liver
15	chr3:99626800-99629800	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:99626800-99631200	Enhancers	NHEK	skin
17	chr3:99627200-99630000	Enhancers	Hela-S3	cervix
18	chr3:99627200-99630600	Enhancers	Stomach Mucosa	stomach
19	chr3:99627200-99638600	Weak transcription	K562	blood
20	chr3:99627400-99629200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:99627800-99631200	Enhancers	HMEC	breast
22	chr3:99628000-99629800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr3:99628000-99630600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:99628000-99631200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:99628200-99629000	Enhancers	HSMM	muscle
26	chr3:99628200-99629400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr3:99628200-99629600	Weak transcription	HSMMtube	muscle
28	chr3:99628200-99629800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:99628200-99630400	Weak transcription	Fetal Kidney	kidney
30	chr3:99628200-99630600	Enhancers	Osteobl	bone
31	chr3:99628400-99630600	Enhancers	NH-A	brain
32	chr3:99628400-99630800	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr3:99628400-99630800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr3:99628400-99631400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr3:99628600-99629400	Enhancers	Colon Smooth Muscle	Colon
36	chr3:99628600-99629600	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr3:99628600-99629600	Enhancers	NHDF-Ad	bronchial
38	chr3:99628600-99629800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr3:99628600-99629800	Flanking Active TSS	A549	lung
40	chr3:99628600-99630000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:99628600-99630000	Enhancers	Muscle Satellite Cultured Cells	--
42	chr3:99628600-99630000	Enhancers	Rectal Smooth Muscle	rectum
43	chr3:99628600-99630000	Enhancers	HUVEC	blood vessel
44	chr3:99628600-99630400	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr3:99628600-99630600	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr3:99628600-99630600	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr3:99628600-99630800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:99628600-99631400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:99628800-99629600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr3:99628800-99629800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links