Variant report

Variant	rs57404542
Chromosome Location	chr10:98172505-98172506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7094141	1.00[AMR][1000 genomes]
rs74151337	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3338394	chr10:98172421-98172582	Bivalent Enhancer Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98159800-98172800	Weak transcription	Left Ventricle	heart
2	chr10:98170600-98172800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:98171400-98172600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
4	chr10:98171400-98172800	Bivalent Enhancer	HSMMtube	muscle
5	chr10:98171400-98174600	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr10:98171600-98174400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:98171600-98182200	Weak transcription	Spleen	Spleen
8	chr10:98172000-98173600	Enhancers	Right Ventricle	heart
9	chr10:98172200-98173000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:98172200-98173400	Enhancers	Psoas Muscle	Psoas
11	chr10:98172200-98174000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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