Variant report

Variant	rs57405432
Chromosome Location	chr2:47649513-47649514
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:47641820..47643781-chr2:47648399..47651100,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12105239	0.85[AMR][1000 genomes]
rs17036580	1.00[ASN][1000 genomes]
rs17217947	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72882797	1.00[ASN][1000 genomes]
rs72884686	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
2	nsv1004828	chr2:47056849-47814482	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv531348	chr2:47433147-47827310	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv999576	chr2:47506116-47773960	Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv527823	chr2:47645249-47709704	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47631400-47657400	Weak transcription	HSMMtube	muscle
2	chr2:47631400-47697000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:47631400-47714400	Weak transcription	Right Ventricle	heart
4	chr2:47631600-47657400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr2:47631800-47650000	Weak transcription	NHLF	lung
6	chr2:47631800-47657000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr2:47631800-47657400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:47631800-47657400	Weak transcription	Brain Angular Gyrus	brain
9	chr2:47631800-47657400	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:47631800-47657400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:47631800-47657400	Weak transcription	Small Intestine	intestine
12	chr2:47631800-47657600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr2:47631800-47659400	Weak transcription	Right Atrium	heart
14	chr2:47631800-47672000	Weak transcription	Pancreas	Pancrea
15	chr2:47631800-47696600	Weak transcription	Esophagus	oesophagus
16	chr2:47631800-47700000	Weak transcription	Colonic Mucosa	Colon
17	chr2:47631800-47704200	Weak transcription	Psoas Muscle	Psoas
18	chr2:47632600-47659600	Strong transcription	Fetal Thymus	thymus
19	chr2:47632800-47659600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr2:47633000-47659600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:47633000-47659600	Strong transcription	Fetal Stomach	stomach
22	chr2:47633000-47714000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr2:47634000-47654200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr2:47634600-47657600	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr2:47634600-47657600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr2:47634600-47657800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:47634800-47657000	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr2:47634800-47658800	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr2:47634800-47659600	Strong transcription	Dnd41	blood
30	chr2:47635000-47657600	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr2:47635000-47657600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr2:47635200-47652200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:47635600-47657800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr2:47636800-47650000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr2:47636800-47659600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr2:47637000-47653000	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr2:47637200-47650200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr2:47637200-47657600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr2:47637400-47650400	Strong transcription	Primary T cells from cord blood	blood
40	chr2:47637600-47658000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr2:47637800-47657600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr2:47638200-47650200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr2:47639200-47651200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr2:47639200-47657200	Weak transcription	Gastric	stomach
45	chr2:47639600-47657600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr2:47641400-47657000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr2:47642200-47657400	Weak transcription	Brain Substantia Nigra	brain
48	chr2:47642400-47657000	Weak transcription	Adipose Nuclei	Adipose
49	chr2:47642400-47657200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr2:47643200-47657400	Weak transcription	Aorta	Aorta

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