Variant report

Variant	rs574109166
Chromosome Location	chr15:52389574-52389575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52388959..52390799-chr15:52394225..52395802,2	MCF-7	breast:
2	chr15:52389425..52391021-chr15:52422602..52424878,2	MCF-7	breast:
3	chr15:52388531..52391551-chr15:52401411..52403881,3	MCF-7	breast:
4	chr15:52389305..52392233-chr15:52393391..52396021,3	K562	blood:
5	chr15:52309194..52314432-chr15:52385325..52393461,10	MCF-7	breast:
6	chr15:52389305..52392233-chr15:52393391..52397295,3	K562	blood:
7	chr15:52388135..52390483-chr15:52464352..52466647,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259438	Chromatin interaction
ENSG00000069956	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530681	chr15:52297253-52390470	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv471244	chr15:52305463-52511465	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv984198	chr15:52319726-52481137	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1054372	chr15:52369078-52579464	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv542387	chr15:52369078-52579464	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv7122	chr15:52388137-52389797	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv3323136	chr15:52388258-52389766	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv3312280	chr15:52388260-52389751	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv3528623	chr15:52388307-52389701	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv3312279	chr15:52388381-52389652	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3528622	chr15:52388391-52389652	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv3312281	chr15:52388395-52389650	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv3312388	chr15:52388395-52389650	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	esv3528624	chr15:52388395-52389650	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv3312387	chr15:52388449-52389655	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52385800-52395400	Weak transcription	Fetal Kidney	kidney
2	chr15:52386200-52399000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:52386400-52391000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:52386600-52390800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr15:52386600-52393000	Weak transcription	Right Atrium	heart
6	chr15:52386800-52390600	Weak transcription	Liver	Liver
7	chr15:52386800-52392600	Weak transcription	Placenta	Placenta
8	chr15:52387200-52390400	Weak transcription	HepG2	liver
9	chr15:52387600-52389800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:52387600-52392200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:52387600-52392600	Weak transcription	NH-A	brain
12	chr15:52387600-52395200	Weak transcription	Colon Smooth Muscle	Colon
13	chr15:52387600-52395400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:52387600-52395400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:52387600-52396600	Weak transcription	Spleen	Spleen
16	chr15:52387600-52396800	Weak transcription	Esophagus	oesophagus
17	chr15:52387800-52391800	Enhancers	Hela-S3	cervix
18	chr15:52387800-52392400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:52387800-52392400	Weak transcription	NHLF	lung
20	chr15:52387800-52392600	Weak transcription	Ovary	ovary
21	chr15:52387800-52393000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:52387800-52393000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:52387800-52393000	Weak transcription	Small Intestine	intestine
24	chr15:52387800-52393000	Weak transcription	HSMMtube	muscle
25	chr15:52388000-52393200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr15:52388200-52389600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:52388200-52392600	Weak transcription	K562	blood
28	chr15:52388400-52390000	Weak transcription	GM12878-XiMat	blood
29	chr15:52388400-52392600	Weak transcription	HMEC	breast
30	chr15:52388600-52390400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:52388600-52392400	Weak transcription	NHDF-Ad	bronchial
32	chr15:52388600-52392600	Weak transcription	NHEK	skin
33	chr15:52388600-52392600	Weak transcription	Osteobl	bone
34	chr15:52388800-52389800	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr15:52389000-52390000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:52389000-52391200	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr15:52389200-52389800	Enhancers	Adipose Nuclei	Adipose
38	chr15:52389200-52390400	Enhancers	Muscle Satellite Cultured Cells	--
39	chr15:52389400-52389800	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr15:52389400-52389800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:52389400-52389800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:52389400-52389800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:52389400-52389800	Enhancers	Colonic Mucosa	Colon
44	chr15:52389400-52389800	Enhancers	Fetal Muscle Leg	muscle
45	chr15:52389400-52389800	Enhancers	A549	lung
46	chr15:52389400-52389800	Enhancers	HSMM	muscle
47	chr15:52389400-52390000	Enhancers	Primary hematopoietic stem cells	blood
48	chr15:52389400-52390200	Enhancers	HUVEC	blood vessel
49	chr15:52389400-52391000	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr15:52389400-52391000	Enhancers	Fetal Intestine Small	intestine

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