Variant report

Variant	rs57411128
Chromosome Location	chr8:100857898-100857899
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:100854102..100856964-chr8:100857323..100858959,3	K562	blood:
2	chr8:100853252..100854810-chr8:100856309..100858942,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16897732	1.00[AMR][1000 genomes]
rs16897743	1.00[AMR][1000 genomes]
rs4073602	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57945707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58336158	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033944	chr8:100737321-100916345	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1830910	chr8:100791156-101114794	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100783200-100858200	Weak transcription	Gastric	stomach
2	chr8:100791400-100861600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:100814200-100872400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:100816800-100858000	Weak transcription	HSMM	muscle
5	chr8:100816800-100858200	Weak transcription	HSMMtube	muscle
6	chr8:100816800-100865800	Weak transcription	Left Ventricle	heart
7	chr8:100816800-100866200	Weak transcription	Pancreas	Pancrea
8	chr8:100817600-100872400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr8:100818400-100865800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:100819000-100865800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:100820200-100874000	Weak transcription	Colonic Mucosa	Colon
12	chr8:100822200-100865600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr8:100826200-100858200	Weak transcription	NHDF-Ad	bronchial
14	chr8:100826400-100865200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr8:100827000-100858400	Weak transcription	Placenta	Placenta
16	chr8:100830400-100858400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr8:100830400-100872200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr8:100832400-100872800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:100833800-100865400	Weak transcription	NHLF	lung
20	chr8:100835400-100869200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr8:100835600-100872200	Weak transcription	Brain Substantia Nigra	brain
22	chr8:100842800-100866200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr8:100843200-100865000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:100843200-100866200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:100843200-100873800	Weak transcription	Esophagus	oesophagus
26	chr8:100844800-100865800	Weak transcription	Fetal Intestine Small	intestine
27	chr8:100844800-100872400	Weak transcription	Brain Hippocampus Middle	brain
28	chr8:100845400-100872000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr8:100845800-100858000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr8:100845800-100866200	Weak transcription	Brain Anterior Caudate	brain
31	chr8:100845800-100872000	Weak transcription	NH-A	brain
32	chr8:100846400-100872000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr8:100846400-100903800	Weak transcription	Stomach Mucosa	stomach
34	chr8:100848200-100865800	Weak transcription	Liver	Liver
35	chr8:100848200-100872000	Weak transcription	Brain Angular Gyrus	brain
36	chr8:100848400-100865800	Weak transcription	Brain Germinal Matrix	brain
37	chr8:100849200-100871000	Weak transcription	Fetal Kidney	kidney
38	chr8:100850200-100858000	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr8:100850200-100887600	Weak transcription	Psoas Muscle	Psoas
40	chr8:100851600-100862000	Strong transcription	Primary B cells from cord blood	blood
41	chr8:100852200-100874000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr8:100852400-100871600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr8:100853200-100860200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr8:100853200-100862000	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr8:100853400-100865200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr8:100853400-100874200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr8:100854000-100860000	Strong transcription	Fetal Stomach	stomach
48	chr8:100854200-100858200	Weak transcription	Fetal Brain Male	brain
49	chr8:100854400-100871800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr8:100855000-100858600	Strong transcription	Lung	lung

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