Variant report

Variant	rs57413357
Chromosome Location	chr9:94911035-94911036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94900325..94903739-chr9:94909399..94912070,4	MCF-7	breast:
2	chr9:94907222..94909546-chr9:94910880..94913844,2	K562	blood:
3	chr9:94909662..94911780-chr9:94913646..94915674,2	K562	blood:
4	chr9:94909200..94911052-chr9:95430848..95432803,2	K562	blood:

Variant related genes	Relation type
ENSG00000238996	Chromatin interaction
ENSG00000225511	Chromatin interaction
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10465156	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2282200	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2282201	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035248	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv969760	chr9:94877924-94966209	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv893572	chr9:94891778-94944778	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv972779	chr9:94910607-94920083	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94906800-94911200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:94909800-94914400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:94910000-94911200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:94910000-94913000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:94910000-94914000	Weak transcription	Brain Hippocampus Middle	brain
6	chr9:94910000-94914000	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:94910200-94913000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:94910200-94913800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:94910200-94914000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:94910200-94914200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:94910200-94914200	Weak transcription	Pancreas	Pancrea
12	chr9:94910200-94914600	Weak transcription	Fetal Lung	lung
13	chr9:94910200-94923800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:94910400-94911200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:94910400-94912400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:94910400-94912400	Weak transcription	HSMM	muscle
17	chr9:94910400-94913400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:94910400-94913400	Weak transcription	NH-A	brain
19	chr9:94910400-94913400	Weak transcription	NHDF-Ad	bronchial
20	chr9:94910400-94913400	Weak transcription	Osteobl	bone
21	chr9:94910400-94913800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:94910400-94913800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:94910400-94913800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:94910400-94913800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:94910400-94913800	Weak transcription	Fetal Muscle Leg	muscle
26	chr9:94910400-94913800	Weak transcription	Ovary	ovary
27	chr9:94910400-94913800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr9:94910400-94913800	Weak transcription	HMEC	breast
29	chr9:94910400-94913800	Weak transcription	NHLF	lung
30	chr9:94910400-94914000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:94910400-94914000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:94910400-94914000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:94910400-94914000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr9:94910400-94914000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:94910400-94914000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr9:94910400-94914000	Weak transcription	A549	lung
37	chr9:94910400-94914000	Weak transcription	HUVEC	blood vessel
38	chr9:94910400-94914000	Weak transcription	NHEK	skin
39	chr9:94910400-94914200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr9:94910400-94914200	Weak transcription	K562	blood
41	chr9:94910400-94914400	Weak transcription	Left Ventricle	heart
42	chr9:94911000-94911200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr9:94911000-94912200	Weak transcription	HSMMtube	muscle
44	chr9:94911000-94913800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr9:94911000-94913800	Weak transcription	Esophagus	oesophagus
46	chr9:94911000-94913800	Weak transcription	Fetal Muscle Trunk	muscle
47	chr9:94911000-94913800	Weak transcription	Placenta	Placenta

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