The 2.0 version of rSNPBase

Variant report

Variant rs57413443
Chromosome Location chr1:224421394-224421395
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:224401800-224427600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr1:224401800-224475400 Weak transcription Esophagus oesophagus
3 chr1:224407600-224434000 Weak transcription Fetal Brain Male brain
4 chr1:224411600-224438000 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr1:224411600-224454400 Weak transcription Psoas Muscle Psoas
6 chr1:224412000-224433000 Weak transcription Fetal Heart heart
7 chr1:224412200-224423200 Weak transcription ES-WA7 Cell Line embryonic stem cell
8 chr1:224412200-224423400 Weak transcription ES-I3 Cell Line embryonic stem cell
9 chr1:224412200-224424800 Weak transcription Stomach Mucosa stomach
10 chr1:224412400-224473600 Weak transcription HepG2 liver
11 chr1:224413200-224432600 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr1:224413800-224428000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:224413800-224428200 Strong transcription Fetal Muscle Trunk muscle
14 chr1:224414000-224432200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
15 chr1:224414200-224421400 Strong transcription HUES64 Cell Line embryonic stem cell
16 chr1:224414200-224422200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr1:224414200-224422600 Strong transcription HUES48 Cell Line embryonic stem cell
18 chr1:224414200-224422600 Strong transcription Primary hematopoietic stem cells short term culture blood
19 chr1:224414200-224424200 Strong transcription Fetal Thymus thymus
20 chr1:224414200-224425000 Strong transcription Breast Myoepithelial Primary Cells Breast
21 chr1:224414200-224425000 Strong transcription Cortex derived primary cultured neurospheres brain
22 chr1:224414200-224426200 Strong transcription Primary monocytes fromperipheralblood blood
23 chr1:224414200-224427800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr1:224414200-224427800 Strong transcription Fetal Adrenal Gland Adrenal Gland
25 chr1:224414200-224428800 Strong transcription Fetal Intestine Large intestine
26 chr1:224414200-224438000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:224414400-224423000 Strong transcription HUES6 Cell Line embryonic stem cell
28 chr1:224414400-224424400 Strong transcription Placenta Placenta
29 chr1:224414400-224428800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
30 chr1:224414600-224426200 Strong transcription Fetal Intestine Small intestine
31 chr1:224415000-224421800 Weak transcription iPS-15b Cell Line embryonic stem cell
32 chr1:224415000-224423400 Weak transcription HUVEC blood vessel
33 chr1:224415000-224436200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr1:224415000-224440000 Weak transcription Fetal Kidney kidney
35 chr1:224415600-224424200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr1:224415600-224426000 Weak transcription Brain Substantia Nigra brain
37 chr1:224415600-224426400 Strong transcription Fetal Stomach stomach
38 chr1:224415600-224432600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
39 chr1:224415600-224435000 Weak transcription Gastric stomach
40 chr1:224415800-224423200 Weak transcription Pancreas Pancrea
41 chr1:224415800-224435600 Weak transcription NHLF lung
42 chr1:224415800-224435800 Weak transcription Brain Angular Gyrus brain
43 chr1:224416000-224423600 Weak transcription Brain Cingulate Gyrus brain
44 chr1:224416000-224423800 Weak transcription NHDF-Ad bronchial
45 chr1:224416000-224426000 Weak transcription Brain Inferior Temporal Lobe brain
46 chr1:224416000-224432800 Weak transcription Primary T killer memory cells from peripheral blood blood
47 chr1:224416000-224436600 Weak transcription Placenta Amnion Placenta Amnion
48 chr1:224416000-224465600 Weak transcription Small Intestine intestine
49 chr1:224416200-224422600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr1:224416200-224423800 Weak transcription Aorta Aorta

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Last update: Aug 31, 2015