Variant report

Variant	rs57414705
Chromosome Location	chr2:113662904-113662905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17042601	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28947192	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57789161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57795454	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60640609	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113660600-113663200	Weak transcription	Fetal Intestine Large	intestine
2	chr2:113661200-113663800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr2:113662200-113663400	Enhancers	K562	blood
4	chr2:113662400-113663600	Enhancers	Fetal Heart	heart
5	chr2:113662800-113663000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links