Variant report

Variant	rs574162
Chromosome Location	chr6:75067425-75067426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1358880	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2635109	0.97[EUR][1000 genomes]
rs2756333	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2756336	0.97[EUR][1000 genomes]
rs278318	0.97[EUR][1000 genomes]
rs507271	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs508269	0.97[EUR][1000 genomes]
rs515393	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs526770	0.96[EUR][1000 genomes]
rs527658	0.97[EUR][1000 genomes]
rs594174	0.97[EUR][1000 genomes]
rs647202	0.82[EUR][1000 genomes]
rs693375	0.91[EUR][1000 genomes]
rs694723	0.97[EUR][1000 genomes]
rs795855	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv35015	chr6:75031337-75154143	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2757178	chr6:75060947-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75065600-75067800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr6:75065600-75067800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:75065800-75067600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:75065800-75067600	Enhancers	Osteobl	bone
5	chr6:75065800-75067800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:75066000-75067800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:75066200-75067600	Enhancers	NHLF	lung
8	chr6:75066400-75072000	Weak transcription	NHDF-Ad	bronchial
9	chr6:75066600-75067600	Enhancers	HMEC	breast
10	chr6:75066800-75067600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:75066800-75067600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:75067000-75067600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:75067400-75067600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:75067400-75067600	Enhancers	Ovary	ovary
15	chr6:75067400-75067600	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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