Variant report

Variant	rs57416378
Chromosome Location	chr22:34128332-34128333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TIMP3-6	chr22:34128242-34129671	ENSG00000224973.1
2	lnc-TIMP3-6	chr22:34128242-34129671	ENSG00000224973.1
3	lnc-TIMP3-6	chr22:34128242-34128488	ENSG00000224973.1
4	lnc-TIMP3-6	chr22:34128242-34129671	NONHSAT085011
5	lnc-TIMP3-6	chr22:34128242-34129671	NONHSAT085013
6	lnc-TIMP3-6	chr22:34128267-34128635	NONHSAT085018

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10483174	0.93[AMR][1000 genomes]
rs11912301	0.84[EUR][1000 genomes]
rs11913748	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16992874	0.87[AMR][1000 genomes]
rs16992883	0.87[AMR][1000 genomes]
rs16992886	0.87[AMR][1000 genomes]
rs16993078	0.84[EUR][1000 genomes]
rs16993089	0.84[EUR][1000 genomes]
rs61150953	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170544	0.87[AMR][1000 genomes]
rs73170546	0.87[AMR][1000 genomes]
rs73170547	0.87[AMR][1000 genomes]
rs73170549	0.87[AMR][1000 genomes]
rs73170550	0.87[AMR][1000 genomes]
rs73170561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170570	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73170572	0.93[AMR][1000 genomes]
rs73170587	0.84[EUR][1000 genomes]
rs73170592	0.84[EUR][1000 genomes]
rs73170593	0.84[EUR][1000 genomes]
rs73170600	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934109	chr22:33722066-34339500	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv531588	chr22:33776857-34150188	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1055791	chr22:33822226-34159536	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	esv2763261	chr22:33831348-34288389	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv917167	chr22:33852676-34137036	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1062832	chr22:33861531-34143295	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv544686	chr22:33861531-34143295	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1057450	chr22:33928913-34849012	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv914990	chr22:34090440-34373293	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1055203	chr22:34098417-34196685	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv914991	chr22:34106384-34293516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv459878	chr22:34106745-34226592	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv588936	chr22:34106745-34226592	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1060684	chr22:34108462-34140653	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1056553	chr22:34116979-34286191	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv524432	chr22:34119866-34146368	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv522709	chr22:34124976-34131153	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:34105600-34133400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr22:34111200-34146200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr22:34111800-34142800	Weak transcription	Fetal Intestine Small	intestine
4	chr22:34116400-34135800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr22:34120200-34135600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr22:34120400-34135800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr22:34121600-34130000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:34121600-34136800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr22:34122800-34129600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr22:34123200-34152000	Weak transcription	Aorta	Aorta
11	chr22:34123800-34129400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr22:34123800-34140800	Weak transcription	Fetal Stomach	stomach
13	chr22:34124000-34128600	Weak transcription	Colonic Mucosa	Colon
14	chr22:34124800-34128800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr22:34124800-34128800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr22:34124800-34133000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr22:34124800-34171000	Weak transcription	Ovary	ovary
18	chr22:34126000-34133000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr22:34126000-34135400	Weak transcription	Right Ventricle	heart
20	chr22:34126000-34137600	Weak transcription	Psoas Muscle	Psoas
21	chr22:34126200-34129000	Weak transcription	Fetal Heart	heart
22	chr22:34126200-34132000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr22:34126200-34176200	Weak transcription	Spleen	Spleen
24	chr22:34128000-34128400	Enhancers	Gastric	stomach
25	chr22:34128000-34128800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr22:34128000-34129000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr22:34128000-34129200	Enhancers	Left Ventricle	heart
28	chr22:34128000-34130200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr22:34128200-34128400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr22:34128200-34128800	Enhancers	NHEK	skin
31	chr22:34128200-34130000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr22:34128200-34133200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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