Variant report

Variant	rs574167833
Chromosome Location	chr12:57152245-57152246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr12:57151472-57153107	K562	blood:	n/a	n/a
2	SETDB1	chr12:57152242-57153129	U2OS	brain:	n/a	n/a
3	MAZ	chr12:57152174-57152248	HepG2	liver:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:57150311..57153103-chr12:57398396..57401285,2	MCF-7	breast:
2	chr12:57150950..57152350-chr12:57399953..57400860,10	MCF-7	breast:
3	chr12:57151760..57156015-chr12:57398737..57401426,4	MCF-7	breast:
4	chr12:57151540..57154477-chr12:57162511..57165120,2	K562	blood:
5	chr12:57145785..57147795-chr12:57149952..57152376,3	K562	blood:
6	chr12:57150330..57152277-chr12:57456345..57457939,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
HSD17B6	TF binding region
ENSG00000198056	Chromatin interaction
ENSG00000166860	Chromatin interaction
ENSG00000025423	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
2	esv1794914	chr12:57119236-57195379	Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv826382	chr12:57151464-57208607	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57146400-57160400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:57151400-57153200	ZNF genes & repeats	HepG2	liver
3	chr12:57152200-57152400	Flanking Active TSS	Liver	Liver
4	chr12:57152200-57161800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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