Variant report

Variant	rs57417178
Chromosome Location	chr6:81250359-81250360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56697071	0.88[AFR][1000 genomes]
rs73748644	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv463908	chr6:81232993-81287675	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604054	chr6:81232993-81287675	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3389701	chr6:81247483-81250381	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81247600-81250400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:81249600-81250600	Enhancers	NHEK	skin
3	chr6:81249600-81251000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:81249600-81251800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:81249600-81252000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:81249600-81252000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:81249600-81252200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:81249600-81252400	Enhancers	HMEC	breast
9	chr6:81249600-81253600	Enhancers	HSMM	muscle
10	chr6:81249800-81252200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:81249800-81252200	Enhancers	Hela-S3	cervix
12	chr6:81249800-81252400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:81250000-81252200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:81250200-81250400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr6:81250200-81250600	Flanking Active TSS	Osteobl	bone
16	chr6:81250200-81251800	Enhancers	NHLF	lung
17	chr6:81250200-81252000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:81250200-81252000	Enhancers	NH-A	brain
19	chr6:81250200-81252200	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links