Variant report

Variant	rs574200273
Chromosome Location	chr4:69961938-69961939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr4:69961690-69962471	HepG2	liver:	n/a	n/a
2	CEBPB	chr4:69961654-69962398	A549	lung:	n/a	chr4:69961952-69961965 chr4:69961952-69961963 chr4:69961949-69961966 chr4:69961952-69961965
3	RAD21	chr4:69961778-69962369	HepG2	liver:	n/a	n/a
4	HDAC2	chr4:69961894-69962352	HepG2	liver:	n/a	n/a
5	HNF4A	chr4:69961906-69962309	HepG2	liver:	n/a	chr4:69962121-69962133
6	JUND	chr4:69961812-69962298	HepG2	liver:	n/a	n/a
7	NFIC	chr4:69960825-69962606	HepG2	liver:	n/a	n/a
8	HDAC2	chr4:69961829-69962451	HepG2	liver:	n/a	n/a
9	CEBPB	chr4:69961869-69962048	Hela-S3	cervix:	n/a	chr4:69961952-69961965 chr4:69961952-69961963 chr4:69961949-69961966 chr4:69961952-69961965
10	CEBPB	chr4:69961787-69962551	HepG2	liver:	n/a	chr4:69961952-69961965 chr4:69961952-69961963 chr4:69961949-69961966 chr4:69961952-69961965
11	EP300	chr4:69961774-69962504	HepG2	liver:	n/a	chr4:69962195-69962209 chr4:69961953-69961967
12	FOXA2	chr4:69960708-69962644	HepG2	liver:	n/a	chr4:69962097-69962109
13	FOS	chr4:69960975-69962225	MCF10A-Er-Src	breast:	n/a	n/a
14	TCF12	chr4:69961807-69962335	A549	lung:	n/a	n/a
15	TCF12	chr4:69960624-69962518	A549	lung:	n/a	n/a
16	FOXA1	chr4:69961770-69962496	HepG2	liver:	n/a	chr4:69962097-69962109
17	STAT3	chr4:69961858-69962131	MCF10A-Er-Src	breast:	n/a	n/a
18	NR3C1	chr4:69961871-69961993	A549	lung:	n/a	n/a
19	EP300	chr4:69961757-69962503	HepG2	liver:	n/a	chr4:69962195-69962209 chr4:69961953-69961967
20	SP1	chr4:69961563-69962466	A549	lung:	n/a	n/a
21	FOXA2	chr4:69960922-69962366	A549	lung:	n/a	chr4:69962097-69962109
22	BCL3	chr4:69961801-69962281	A549	lung:	n/a	n/a
23	ARID3A	chr4:69960997-69962638	HepG2	liver:	n/a	n/a
24	MYC	chr4:69961887-69962248	MCF10A-Er-Src	breast:	n/a	n/a
25	NFIC	chr4:69961809-69962393	HepG2	liver:	n/a	n/a
26	FOXA2	chr4:69961824-69962385	A549	lung:	n/a	chr4:69962097-69962109
27	FOSL2	chr4:69960798-69962386	A549	lung:	n/a	n/a
28	NR3C1	chr4:69961856-69962260	A549	lung:	n/a	n/a
29	FOXA1	chr4:69961804-69962452	HepG2	liver:	n/a	chr4:69962097-69962109
30	CEBPB	chr4:69961795-69962072	HepG2	liver:	n/a	chr4:69961952-69961965 chr4:69961952-69961963 chr4:69961949-69961966 chr4:69961952-69961965
31	HNF4A	chr4:69961909-69962304	HepG2	liver:	n/a	chr4:69962121-69962133
32	CEBPB	chr4:69961861-69962033	HepG2	liver:	n/a	chr4:69961952-69961965 chr4:69961952-69961963 chr4:69961949-69961966 chr4:69961952-69961965
33	FOS	chr4:69960914-69962258	MCF10A-Er-Src	breast:	n/a	n/a
34	JUN	chr4:69961833-69962328	HepG2	liver:	n/a	n/a
35	MBD4	chr4:69961782-69962497	HepG2	liver:	n/a	n/a
36	CEBPB	chr4:69961802-69962387	A549	lung:	n/a	chr4:69961952-69961965 chr4:69961952-69961963 chr4:69961949-69961966 chr4:69961952-69961965
37	FOXA1	chr4:69961852-69962417	HepG2	liver:	n/a	chr4:69962097-69962109
38	STAT3	chr4:69961744-69962246	MCF10A-Er-Src	breast:	n/a	n/a
39	POLR2A	chr4:69961867-69962093	MCF10A-Er-Src	breast:	n/a	n/a
40	EP300	chr4:69961883-69962295	HepG2	liver:	n/a	chr4:69962195-69962209 chr4:69961953-69961967
41	POLR2A	chr4:69961857-69962219	MCF10A-Er-Src	breast:	n/a	n/a
42	MYC	chr4:69961903-69962258	MCF10A-Er-Src	breast:	n/a	n/a
43	CEBPB	chr4:69961749-69962164	A549	lung:	n/a	chr4:69961952-69961965 chr4:69961952-69961963 chr4:69961949-69961966 chr4:69961952-69961965
44	JUND	chr4:69961810-69962417	A549	lung:	n/a	n/a
45	FOXA2	chr4:69961811-69962379	HepG2	liver:	n/a	chr4:69962097-69962109
46	JUND	chr4:69961863-69962408	HepG2	liver:	n/a	n/a
47	BCL3	chr4:69960907-69962340	A549	lung:	n/a	n/a
48	FOXA1	chr4:69960937-69962471	HepG2	liver:	n/a	chr4:69962097-69962109
49	TCF7L2	chr4:69961844-69962303	HepG2	liver:	n/a	chr4:69962017-69962033 chr4:69962018-69962032
50	EP300	chr4:69960670-69962557	A549	lung:	n/a	chr4:69962195-69962209 chr4:69961953-69961967

Variant related genes	Relation type
UGT2B7	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv594582	chr4:69827340-69988378	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv879379	chr4:69878929-69987249	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv594583	chr4:69928642-69988378	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv427683	chr4:69929701-70414172	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv522091	chr4:69932587-69988378	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv999858	chr4:69933262-70676525	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	nsv1000261	chr4:69954600-70642254	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv537134	chr4:69954600-70642254	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	nsv879380	chr4:69961912-70046930	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69959600-69980000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:69960000-69962000	Enhancers	HepG2	liver
3	chr4:69960200-69962600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:69960400-69962200	Enhancers	Fetal Intestine Large	intestine
5	chr4:69960400-69962400	Enhancers	NHEK	skin
6	chr4:69960800-69962000	Enhancers	HSMM	muscle
7	chr4:69960800-69962200	Enhancers	Fetal Intestine Small	intestine
8	chr4:69960800-69962400	Enhancers	HUVEC	blood vessel
9	chr4:69960800-69962600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:69960800-69962600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:69961000-69962200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr4:69961000-69962200	Enhancers	Hela-S3	cervix
13	chr4:69961000-69962600	Enhancers	HMEC	breast
14	chr4:69961200-69962200	Weak transcription	Pancreas	Pancrea
15	chr4:69961400-69962000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr4:69961600-69962000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:69961600-69962200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:69961600-69962400	Flanking Active TSS	A549	lung
19	chr4:69961600-69962800	Enhancers	Stomach Mucosa	stomach
20	chr4:69961800-69962000	Enhancers	Osteobl	bone
21	chr4:69961800-69962200	Enhancers	Liver	Liver
22	chr4:69961800-69962200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:69961800-69962400	Enhancers	Pancreatic Islets	Pancreatic Islet

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