Variant report

Variant	rs574200850
Chromosome Location	chr7:140582599-140582600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140581979..140583708-chr7:140590896..140592469,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351231	chr7:140390303-140588539	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831158	chr7:140392222-140602315	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv518139	chr7:140512661-140622355	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029363	chr7:140567136-140594073	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	esv2761117	chr7:140582100-140594085	Enhancers Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140549000-140594400	Weak transcription	Fetal Thymus	thymus
2	chr7:140563600-140586000	Weak transcription	K562	blood
3	chr7:140568000-140586000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:140570600-140606000	Weak transcription	Fetal Intestine Small	intestine
5	chr7:140570800-140583000	Weak transcription	Primary B cells from cord blood	blood
6	chr7:140570800-140584200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:140573600-140587800	Weak transcription	Left Ventricle	heart
8	chr7:140576600-140585600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:140577000-140586800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr7:140577000-140591000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:140577400-140585600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:140577600-140586400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr7:140577600-140589600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:140577600-140598600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:140578600-140585600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:140578800-140586200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr7:140580000-140584000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:140580400-140603200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:140581400-140585600	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:140581400-140587400	Weak transcription	Lung	lung
21	chr7:140581600-140585800	Weak transcription	Primary T cells from cord blood	blood
22	chr7:140581600-140586000	Weak transcription	Brain Angular Gyrus	brain
23	chr7:140581800-140585600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr7:140581800-140585600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr7:140581800-140585800	Weak transcription	Brain Anterior Caudate	brain
26	chr7:140581800-140586000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr7:140581800-140587200	Weak transcription	Fetal Heart	heart
28	chr7:140581800-140588000	Weak transcription	Pancreas	Pancrea
29	chr7:140582000-140583000	Weak transcription	GM12878-XiMat	blood
30	chr7:140582000-140585200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr7:140582400-140582600	Enhancers	Gastric	stomach

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