Variant report

Variant	rs57420270
Chromosome Location	chr2:9875214-9875215
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56775069	1.00[AFR][1000 genomes]
rs57492203	1.00[AFR][1000 genomes]
rs57569408	1.00[AFR][1000 genomes]
rs58232055	1.00[AFR][1000 genomes]
rs59408306	1.00[AFR][1000 genomes]
rs61125212	1.00[AFR][1000 genomes]
rs73155135	1.00[AFR][1000 genomes]
rs73155146	1.00[AFR][1000 genomes]
rs73155149	1.00[AFR][1000 genomes]
rs73155151	1.00[AFR][1000 genomes]
rs73155152	1.00[AFR][1000 genomes]
rs73155159	1.00[AFR][1000 genomes]
rs73155162	1.00[AFR][1000 genomes]
rs73155164	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469405	chr2:9814374-9964947	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv580930	chr2:9814374-9964947	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1003026	chr2:9854939-10012516	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv470443	chr2:9857018-9975557	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1014911	chr2:9863969-9905959	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv873618	chr2:9870631-9919759	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv873619	chr2:9870631-9956981	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9869600-9875800	Weak transcription	Fetal Thymus	thymus
2	chr2:9875000-9879200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr2:9875000-9879200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr2:9875000-9879400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:9875000-9879400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr2:9875200-9876800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:9875200-9877400	Enhancers	HMEC	breast
8	chr2:9875200-9877600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:9875200-9877600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr2:9875200-9877800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr2:9875200-9878800	Weak transcription	Colon Smooth Muscle	Colon
12	chr2:9875200-9879000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr2:9875200-9879000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr2:9875200-9879000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr2:9875200-9879000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr2:9875200-9879400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr2:9875200-9879400	Enhancers	Primary T helper cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links