Variant report

Variant	rs574248582
Chromosome Location	chr3:58274238-58274239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529990	chr3:57897017-58395655	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv528147	chr3:57915474-58370177	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv834703	chr3:58058518-58284497	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1001814	chr3:58144608-58339924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv590369	chr3:58269712-58317692	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv3384845	chr3:58274062-58278060	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:58237400-58275600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:58238000-58276000	Weak transcription	Stomach Mucosa	stomach
3	chr3:58238600-58277400	Weak transcription	GM12878-XiMat	blood
4	chr3:58240600-58281600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr3:58243400-58275200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr3:58245000-58275600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:58246600-58274400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:58251800-58276200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:58254800-58276200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:58255200-58276400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:58258000-58275800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:58258800-58281600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:58258800-58282000	Weak transcription	NHEK	skin
14	chr3:58259000-58274400	Weak transcription	NHLF	lung
15	chr3:58259600-58275000	Weak transcription	K562	blood
16	chr3:58260600-58282400	Weak transcription	NHDF-Ad	bronchial
17	chr3:58260800-58285400	Weak transcription	Fetal Brain Male	brain
18	chr3:58261000-58281000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:58261000-58284000	Weak transcription	Pancreas	Pancrea
20	chr3:58261400-58282200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:58264800-58278000	Weak transcription	Fetal Thymus	thymus
22	chr3:58265600-58274800	Strong transcription	Fetal Intestine Large	intestine
23	chr3:58265800-58274800	Strong transcription	Adipose Nuclei	Adipose
24	chr3:58266000-58274600	Strong transcription	Duodenum Mucosa	Duodenum
25	chr3:58266200-58274400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr3:58266200-58274600	Strong transcription	Primary B cells from peripheral blood	blood
27	chr3:58266400-58274600	Strong transcription	Liver	Liver
28	chr3:58266400-58275000	Strong transcription	Fetal Intestine Small	intestine
29	chr3:58266600-58274400	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr3:58267000-58274600	Strong transcription	Fetal Brain Female	brain
31	chr3:58267200-58274600	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr3:58267200-58274600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr3:58267200-58276000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr3:58268000-58280600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:58269200-58282000	Weak transcription	Colonic Mucosa	Colon
36	chr3:58270600-58274400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr3:58270600-58274600	Strong transcription	Fetal Stomach	stomach
38	chr3:58270600-58275000	Strong transcription	Brain Germinal Matrix	brain
39	chr3:58270800-58274600	Genic enhancers	Brain Hippocampus Middle	brain
40	chr3:58270800-58275400	Weak transcription	Small Intestine	intestine
41	chr3:58271000-58274600	Strong transcription	Primary T cells from cord blood	blood
42	chr3:58271400-58276600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:58271400-58280000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr3:58271400-58280400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr3:58271400-58281000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:58271400-58282000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:58272200-58274400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr3:58272200-58274600	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:58272400-58275800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:58272400-58281000	Weak transcription	Colon Smooth Muscle	Colon

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