Variant report

Variant	rs574277068
Chromosome Location	chr9:115812719-115812720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1047000	chr9:115610445-115884038	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv466491	chr9:115745205-115814473	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv831691	chr9:115754699-115929459	Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1048246	chr9:115759281-115821188	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv540198	chr9:115759281-115821188	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1039564	chr9:115769553-115821327	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv540199	chr9:115769553-115821327	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv1042280	chr9:115769753-115821188	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv540200	chr9:115769753-115821188	ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv517282	chr9:115775168-115815398	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
13	nsv615204	chr9:115775739-115815398	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
14	nsv1037784	chr9:115777096-115820554	ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
15	esv2764155	chr9:115777108-115820566	Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
16	nsv508563	chr9:115800632-115855728	Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
17	nsv6672	chr9:115811030-115856455	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv825051	chr9:115811606-115882022	ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv825052	chr9:115811634-115882048	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115793000-115822200	ZNF genes & repeats	Liver	Liver
2	chr9:115795800-115817800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:115798800-115818200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr9:115799600-115820400	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr9:115799800-115817600	ZNF genes & repeats	Brain Hippocampus Middle	brain
6	chr9:115799800-115818200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:115801800-115817400	ZNF genes & repeats	Brain Germinal Matrix	brain
8	chr9:115802000-115818000	ZNF genes & repeats	Brain Anterior Caudate	brain
9	chr9:115802200-115813400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:115802200-115815400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr9:115802400-115814800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chr9:115802400-115815600	ZNF genes & repeats	Brain Substantia Nigra	brain
13	chr9:115803200-115813000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
14	chr9:115803200-115817600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:115803200-115817800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:115803200-115817800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr9:115803200-115817800	ZNF genes & repeats	Fetal Brain Female	brain
18	chr9:115803200-115818000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:115803600-115813000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
20	chr9:115803600-115815400	ZNF genes & repeats	Colon Smooth Muscle	Colon
21	chr9:115803600-115815600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr9:115805000-115815400	ZNF genes & repeats	Left Ventricle	heart
23	chr9:115805000-115818200	ZNF genes & repeats	Fetal Lung	lung
24	chr9:115805200-115812800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
25	chr9:115805200-115813000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
26	chr9:115805200-115818400	ZNF genes & repeats	Fetal Muscle Leg	muscle
27	chr9:115805400-115812800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:115805400-115815000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:115805600-115816000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
30	chr9:115807000-115818000	Weak transcription	Hela-S3	cervix
31	chr9:115808000-115814600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:115808600-115817200	Weak transcription	Stomach Mucosa	stomach
33	chr9:115809400-115813000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr9:115809600-115812800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
35	chr9:115810600-115813000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
36	chr9:115810600-115816200	ZNF genes & repeats	Aorta	Aorta
37	chr9:115811800-115813200	ZNF genes & repeats	Fetal Stomach	stomach
38	chr9:115812000-115812800	Weak transcription	Fetal Intestine Large	intestine
39	chr9:115812200-115813800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:115812200-115813800	Weak transcription	Right Ventricle	heart
41	chr9:115812200-115813800	Weak transcription	A549	lung
42	chr9:115812200-115818400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr9:115812400-115812800	Weak transcription	Placenta	Placenta
44	chr9:115812400-115813400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr9:115812400-115813800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr9:115812600-115813600	Weak transcription	Primary T cells from cord blood	blood
47	chr9:115812600-115813800	Weak transcription	Pancreas	Pancrea
48	chr9:115812600-115813800	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links