Variant report

Variant	rs574283797
Chromosome Location	chr3:86842849-86842850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877116	chr3:86518318-86964922	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv877117	chr3:86665408-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv877118	chr3:86722823-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv877119	chr3:86722823-86952516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv877120	chr3:86722823-86961118	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv877121	chr3:86732817-86916882	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv877122	chr3:86732817-86927574	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv877123	chr3:86732817-86952516	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv877125	chr3:86794501-86916882	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv877126	chr3:86794501-86927574	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv519148	chr3:86831077-86995124	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv877127	chr3:86832039-86952516	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1008177	chr3:86841615-86905761	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86836600-86864400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:86841400-86843400	Enhancers	HSMM	muscle
3	chr3:86841600-86843400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:86841600-86843400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:86841600-86843400	Enhancers	NH-A	brain
6	chr3:86841600-86843400	Enhancers	NHDF-Ad	bronchial
7	chr3:86841600-86843400	Enhancers	NHLF	lung
8	chr3:86841600-86843400	Enhancers	Osteobl	bone
9	chr3:86841800-86843200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:86842400-86843000	Enhancers	Rectal Smooth Muscle	rectum
11	chr3:86842400-86843600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:86842400-86844000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:86842400-86844000	Enhancers	Hela-S3	cervix
14	chr3:86842400-86844200	Enhancers	Brain Substantia Nigra	brain
15	chr3:86842600-86843000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:86842600-86843000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr3:86842600-86843400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:86842600-86843400	Enhancers	Colon Smooth Muscle	Colon
19	chr3:86842600-86843600	Enhancers	Fetal Lung	lung
20	chr3:86842600-86843600	Enhancers	NHEK	skin
21	chr3:86842600-86843800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr3:86842600-86843800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:86842600-86843800	Enhancers	HMEC	breast
24	chr3:86842600-86844000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr3:86842600-86844000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr3:86842600-86844800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr3:86842800-86843000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:86842800-86843000	Enhancers	Aorta	Aorta
29	chr3:86842800-86843000	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr3:86842800-86843000	Flanking Active TSS	HSMMtube	muscle
31	chr3:86842800-86843200	Enhancers	Brain Angular Gyrus	brain
32	chr3:86842800-86843200	Flanking Active TSS	Brain Hippocampus Middle	brain
33	chr3:86842800-86843200	Enhancers	Fetal Heart	heart
34	chr3:86842800-86843400	Enhancers	H1 Cell Line	embryonic stem cell
35	chr3:86842800-86843400	Flanking Active TSS	A549	lung
36	chr3:86842800-86843600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr3:86842800-86843600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr3:86842800-86843600	Enhancers	Adipose Nuclei	Adipose
39	chr3:86842800-86843600	Enhancers	Fetal Muscle Leg	muscle
40	chr3:86842800-86843600	Enhancers	Placenta Amnion	Placenta Amnion
41	chr3:86842800-86843800	Enhancers	H9 Cell Line	embryonic stem cell
42	chr3:86842800-86843800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:86842800-86843800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr3:86842800-86843800	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr3:86842800-86844000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr3:86842800-86844000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr3:86842800-86844000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:86842800-86844400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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