The 2.0 version of rSNPBase

Variant report

Variant rs574285739
Chromosome Location chr6:5729236-5729237
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5717600-5729600 Weak transcription Brain Substantia Nigra brain
2 chr6:5723000-5744200 Weak transcription Right Ventricle heart
3 chr6:5724800-5729400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr6:5725000-5729800 Enhancers Primary B cells from cord blood blood
5 chr6:5725000-5730000 Enhancers Primary B cells from peripheral blood blood
6 chr6:5725000-5731600 Weak transcription Colonic Mucosa Colon
7 chr6:5725000-5737000 Weak transcription Primary T cells from cord blood blood
8 chr6:5725200-5749200 Weak transcription Breast Myoepithelial Primary Cells Breast
9 chr6:5726000-5749400 Weak transcription Fetal Intestine Small intestine
10 chr6:5727000-5762400 Weak transcription Stomach Smooth Muscle stomach
11 chr6:5727200-5729800 Enhancers Fetal Muscle Leg muscle
12 chr6:5727200-5731400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr6:5727800-5729600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
14 chr6:5728000-5729400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
15 chr6:5728000-5729800 Enhancers Fetal Brain Male brain
16 chr6:5728000-5730200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr6:5728000-5730200 Enhancers Fetal Brain Female brain
18 chr6:5728000-5730800 Enhancers Brain Germinal Matrix brain
19 chr6:5728200-5729400 Enhancers Cortex derived primary cultured neurospheres brain
20 chr6:5728200-5730400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr6:5728400-5731400 Weak transcription Fetal Thymus thymus
22 chr6:5728600-5731400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr6:5728800-5729400 Enhancers HUES6 Cell Line embryonic stem cell
24 chr6:5728800-5729400 Flanking Active TSS GM12878-XiMat blood
25 chr6:5728800-5729600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
26 chr6:5728800-5729800 Enhancers HUES64 Cell Line embryonic stem cell
27 chr6:5728800-5729800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
28 chr6:5728800-5729800 Enhancers HMEC breast
29 chr6:5729000-5729600 Enhancers H1 Cell Line embryonic stem cell
30 chr6:5729000-5729600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
31 chr6:5729000-5729600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr6:5729000-5729600 Enhancers Esophagus oesophagus
33 chr6:5729000-5729600 Enhancers Spleen Spleen
34 chr6:5729000-5729800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr6:5729000-5729800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr6:5729000-5729800 Enhancers Left Ventricle heart
37 chr6:5729000-5729800 Enhancers Lung lung
38 chr6:5729000-5730000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr6:5729000-5730000 Enhancers HUVEC blood vessel
40 chr6:5729000-5730600 Enhancers ES-I3 Cell Line embryonic stem cell
41 chr6:5729000-5731200 Enhancers Fetal Lung lung
42 chr6:5729200-5729400 Enhancers H9 Cell Line embryonic stem cell
43 chr6:5729200-5729400 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
44 chr6:5729200-5729600 Enhancers iPS-20b Cell Line embryonic stem cell
45 chr6:5729200-5729600 Enhancers Skeletal Muscle Female skeletal muscle
46 chr6:5729200-5729600 Enhancers Osteobl bone
47 chr6:5729200-5729800 Enhancers NH-A brain
48 chr6:5729200-5729800 Enhancers NHEK skin
49 chr6:5729200-5730000 Weak transcription Fetal Stomach stomach
50 chr6:5729200-5730400 Enhancers Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015