Variant report

Variant	rs5743028
Chromosome Location	chr2:190674599-190674600
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190668108..190669723-chr2:190672728..190674639,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs5743003	0.91[AFR][1000 genomes]
rs5743024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743048	0.91[AFR][1000 genomes]
rs5743067	0.91[AFR][1000 genomes]
rs5743118	1.00[AMR][1000 genomes]
rs58147864	0.91[AFR][1000 genomes]
rs73042330	0.93[AFR][1000 genomes]
rs73042345	1.00[AMR][1000 genomes]
rs73044280	1.00[AMR][1000 genomes]
rs73054335	0.91[AFR][1000 genomes]
rs73054336	0.91[AFR][1000 genomes]
rs73054339	0.91[AFR][1000 genomes]
rs73054342	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3080	chr2:190661654-190706515	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190649800-190675200	Weak transcription	Esophagus	oesophagus
2	chr2:190649800-190713400	Weak transcription	Gastric	stomach
3	chr2:190650000-190688200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:190650400-190675800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:190650400-190686800	Weak transcription	Thymus	Thymus
6	chr2:190650400-190688400	Weak transcription	Colonic Mucosa	Colon
7	chr2:190650400-190689800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr2:190650400-190711400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:190650600-190683200	Weak transcription	Fetal Brain Male	brain
10	chr2:190650600-190688800	Weak transcription	Fetal Heart	heart
11	chr2:190650600-190693200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:190650600-190700400	Weak transcription	Hela-S3	cervix
13	chr2:190650800-190675200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:190656200-190677800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr2:190656800-190685000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:190656800-190721000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr2:190658200-190743800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr2:190659000-190685000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:190659200-190681200	Weak transcription	Spleen	Spleen
20	chr2:190659800-190686800	Weak transcription	Fetal Stomach	stomach
21	chr2:190659800-190743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr2:190661400-190717800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr2:190662600-190674600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr2:190662600-190683000	Weak transcription	Adipose Nuclei	Adipose
25	chr2:190662600-190686800	Weak transcription	Left Ventricle	heart
26	chr2:190662800-190674600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr2:190662800-190719000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr2:190663000-190674600	Weak transcription	Fetal Kidney	kidney
29	chr2:190663000-190682600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr2:190663000-190682800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr2:190663000-190683000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr2:190663000-190685600	Weak transcription	Brain Anterior Caudate	brain
33	chr2:190663000-190701600	Weak transcription	Psoas Muscle	Psoas
34	chr2:190663000-190712800	Weak transcription	Aorta	Aorta
35	chr2:190663200-190683000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr2:190663200-190700600	Weak transcription	Colon Smooth Muscle	Colon
37	chr2:190663200-190712400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr2:190663400-190674800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr2:190663400-190683400	Weak transcription	Brain Hippocampus Middle	brain
40	chr2:190664600-190680000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr2:190664600-190683600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr2:190664800-190674800	Weak transcription	HSMMtube	muscle
43	chr2:190664800-190675200	Weak transcription	K562	blood
44	chr2:190664800-190675800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr2:190664800-190676400	Strong transcription	Dnd41	blood
46	chr2:190664800-190686800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr2:190664800-190741800	Weak transcription	Brain Angular Gyrus	brain
48	chr2:190665000-190674800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr2:190665000-190675800	Weak transcription	Fetal Intestine Large	intestine
50	chr2:190665000-190676400	Weak transcription	Fetal Lung	lung

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