The 2.0 version of rSNPBase

Variant report

Variant rs5743090
Chromosome Location chr2:190704183-190704184
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:190649800-190713400 Weak transcription Gastric stomach
2 chr2:190650400-190711400 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr2:190656800-190721000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr2:190658200-190743800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr2:190659800-190743600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr2:190661400-190717800 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr2:190662800-190719000 Weak transcription Primary T killer naive cells fromperipheralblood blood
8 chr2:190663000-190712800 Weak transcription Aorta Aorta
9 chr2:190663200-190712400 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr2:190664800-190741800 Weak transcription Brain Angular Gyrus brain
11 chr2:190669400-190743800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr2:190669600-190709600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr2:190669600-190713200 Weak transcription Ovary ovary
14 chr2:190669800-190709000 Weak transcription Placenta Placenta
15 chr2:190670800-190712800 Weak transcription Primary T regulatory cells fromperipheralblood blood
16 chr2:190671000-190719600 Weak transcription NH-A brain
17 chr2:190676200-190712400 Weak transcription K562 blood
18 chr2:190677000-190709400 Weak transcription Fetal Intestine Small intestine
19 chr2:190681000-190743000 Weak transcription Brain Germinal Matrix brain
20 chr2:190683800-190709800 Weak transcription Primary T helper cells PMA-I stimulated --
21 chr2:190684000-190712600 Weak transcription Duodenum Smooth Muscle Duodenum
22 chr2:190684000-190712800 Weak transcription Duodenum Mucosa Duodenum
23 chr2:190684000-190743600 Weak transcription Brain Inferior Temporal Lobe brain
24 chr2:190684600-190709800 Weak transcription HMEC breast
25 chr2:190684600-190712600 Weak transcription Primary hematopoietic stem cells blood
26 chr2:190684600-190712600 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr2:190685000-190712600 Weak transcription HUES6 Cell Line embryonic stem cell
28 chr2:190685000-190736400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr2:190685200-190706200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
30 chr2:190685200-190708400 Weak transcription Fetal Intestine Large intestine
31 chr2:190685400-190712800 Weak transcription Adipose Nuclei Adipose
32 chr2:190685400-190739400 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr2:190685400-190741800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr2:190685600-190709600 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr2:190685600-190712800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
36 chr2:190685800-190708600 Weak transcription Liver Liver
37 chr2:190685800-190708800 Weak transcription Primary T helper cells fromperipheralblood blood
38 chr2:190685800-190709600 Weak transcription Fetal Muscle Trunk muscle
39 chr2:190686000-190711400 Weak transcription Primary B cells from peripheral blood blood
40 chr2:190687000-190706800 Weak transcription Left Ventricle heart
41 chr2:190687000-190712800 Weak transcription Thymus Thymus
42 chr2:190687000-190724400 Weak transcription Esophagus oesophagus
43 chr2:190687000-190738400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr2:190687000-190738400 Weak transcription Lung lung
45 chr2:190687200-190706800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr2:190687200-190710200 Weak transcription Breast Myoepithelial Primary Cells Breast
47 chr2:190687200-190710400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
48 chr2:190687400-190708800 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr2:190691000-190706200 Weak transcription H1 Cell Line embryonic stem cell
50 chr2:190691000-190709600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015