Variant report

Variant	rs574310105
Chromosome Location	chr7:127852450-127852451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LEP-2	chr7:127846774-127858291	NONHSAT123172

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv33413	chr7:127800064-127929303	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv5945	chr7:127852004-127880768	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127844000-127875600	Weak transcription	Right Atrium	heart
2	chr7:127849400-127852800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:127850000-127867400	Weak transcription	Spleen	Spleen
4	chr7:127850200-127855000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:127850400-127854600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:127850400-127854600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:127850400-127856000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:127851200-127852600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr7:127851200-127852800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:127851200-127852800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr7:127851200-127853400	Weak transcription	Osteobl	bone
12	chr7:127851400-127852600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:127851400-127852600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:127851400-127852800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:127851400-127852800	Enhancers	HSMM	muscle
16	chr7:127851400-127854800	Weak transcription	HSMMtube	muscle
17	chr7:127851800-127852600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:127852200-127855000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:127852200-127855200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:127852400-127855000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:127852400-127855200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr7:127852400-127855200	Weak transcription	HMEC	breast
23	chr7:127852400-127855400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:127852400-127857000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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