Variant report

Variant	rs57431082
Chromosome Location	chr9:117509422-117509423
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56664866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57831815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58465087	1.00[AMR][1000 genomes]
rs60059180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7038406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7048850	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117506600-117510200	Enhancers	NHDF-Ad	bronchial
2	chr9:117506600-117510600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:117507400-117509600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:117507400-117509600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:117507400-117509600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:117507600-117509600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:117507600-117510200	Enhancers	Brain Germinal Matrix	brain
8	chr9:117507600-117510200	Enhancers	Fetal Stomach	stomach
9	chr9:117507800-117509600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr9:117508600-117509600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:117509000-117509600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:117509200-117510400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links