Variant report

Variant	rs574319519
Chromosome Location	chr12:45042989-45042990
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv430506	chr12:45003342-45072343	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2762978	chr12:45042460-45051490	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45004800-45043200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr12:45005000-45044200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:45015000-45048400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:45023400-45055600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr12:45031600-45059200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr12:45035400-45043200	Weak transcription	Fetal Stomach	stomach
7	chr12:45036600-45046600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:45036800-45043200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:45041800-45043800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr12:45042000-45043400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr12:45042400-45043200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr12:45042400-45043400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr12:45042400-45047600	Weak transcription	Fetal Brain Female	brain
14	chr12:45042400-45047800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr12:45042400-45047800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr12:45042600-45043000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr12:45042600-45043200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr12:45042600-45043800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:45042800-45043600	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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