Variant report

Variant	rs574327985
Chromosome Location	chr11:104683000-104683001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv826072	chr11:104662708-104768357	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832255	chr11:104674918-104846961	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104682800-104683000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr11:104682800-104683200	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:104682800-104683400	Enhancers	Brain Hippocampus Middle	brain
4	chr11:104682800-104685400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:104683000-104683200	Enhancers	Fetal Brain Female	brain
6	chr11:104683000-104683400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:104683000-104683400	Enhancers	Brain Substantia Nigra	brain
8	chr11:104683000-104683400	Enhancers	Fetal Lung	lung
9	chr11:104683000-104683600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:104683000-104684000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:104683000-104684600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:104683000-104684800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:104683000-104684800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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