Variant report

Variant	rs5743305
Chromosome Location	chr4:186989333-186989334
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:186989260-186989410	GM12866	blood:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
2	RAD21	chr4:186989263-186989462	GM12878	blood:	n/a	chr4:186989353-186989362 chr4:186989349-186989368
3	CTCF	chr4:186989243-186989466	Hela-S3	cervix:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
4	CTCF	chr4:186989280-186989430	AG09319	gingival:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
5	CTCF	chr4:186989240-186989390	BJ	skin:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
6	RAD21	chr4:186989158-186989573	MCF-7	breast:	n/a	chr4:186989353-186989362 chr4:186989349-186989368
7	CTCF	chr4:186989280-186989430	GM12870	blood:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
8	CTCF	chr4:186989240-186989390	MCF-7	breast:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
9	ZNF143	chr4:186989322-186989467	Hela-S3	cervix:	n/a	n/a
10	CTCF	chr4:186989280-186989430	HPF	lung:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
11	CTCF	chr4:186989280-186989430	A549	lung:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
12	CTCF	chr4:186989237-186989485	ProgFib	skin:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
13	CTCF	chr4:186989242-186989372	SK-N-SH_RA	brain:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
14	CTCF	chr4:186989320-186989470	GM12873	blood:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
15	CTCF	chr4:186989280-186989430	NHDF-neo	bronchial:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
16	CTCF	chr4:186989260-186989410	Caco-2	colon:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
17	CTCF	chr4:186989300-186989450	SK-N-SH_RA	brain:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
18	CTCF	chr4:186989300-186989450	HRPEpiC	eye:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
19	RAD21	chr4:186989140-186989607	A549	lung:	n/a	chr4:186989353-186989362 chr4:186989349-186989368
20	CTCF	chr4:186989281-186989452	H1-hESC	embryonic stem cell:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
21	CTCF	chr4:186989280-186989430	HEEpiC	esophagus:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
22	CTCF	chr4:186989280-186989430	GM12878	blood:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
23	CTCF	chr4:186989173-186989562	GM12878	blood:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
24	CTCF	chr4:186989260-186989410	SAEC	small airway:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
25	CBX3	chr4:186989030-186989622	HCT-116	colon:	n/a	chr4:186989176-186989187
26	CTCF	chr4:186989260-186989410	MCF-7	breast:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
27	CTCF	chr4:186989280-186989430	HCM	heart:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
28	CTCF	chr4:186989249-186989447	GM10266	blood:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
29	CTCF	chr4:186989144-186989468	A549	lung:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
30	CTCF	chr4:186989280-186989430	BJ	skin:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
31	CTCF	chr4:186989240-186989390	SK-N-SH_RA	brain:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
32	CTCF	chr4:186989240-186989390	HPAF	blood vessel:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
33	CTCF	chr4:186989300-186989450	NHLF	lung:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
34	CTCF	chr4:186989285-186989447	MCF-7	breast:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
35	CTCF	chr4:186989280-186989430	HVMF	connective:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
36	CTCF	chr4:186989260-186989410	WERI-Rb-1	eye:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
37	CTCF	chr4:186989292-186989455	GM20000	blood:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
38	CTCF	chr4:186989249-186989471	HepG2	liver:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
39	RAD21	chr4:186989240-186989492	GM12878	blood:	n/a	chr4:186989353-186989362 chr4:186989349-186989368
40	CTCF	chr4:186989231-186989473	MCF-7	breast:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
41	RAD21	chr4:186989113-186989633	HepG2	liver:	n/a	chr4:186989353-186989362 chr4:186989349-186989368
42	CTCF	chr4:186989240-186989390	HAc	cerebellar:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
43	CTCF	chr4:186989232-186989458	Medullo	brain:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
44	CTCF	chr4:186989230-186989495	HepG2	liver:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
45	RAD21	chr4:186989170-186989563	ECC-1	luminal epithelium:	n/a	chr4:186989353-186989362 chr4:186989349-186989368
46	MAX	chr4:186989021-186989672	HCT-116	colon:	n/a	n/a
47	CTCF	chr4:186989260-186989410	NB4	blood:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
48	CTCF	chr4:186989300-186989450	RPTEC	kidney:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371
49	MAX	chr4:186989257-186989497	HepG2	liver:	n/a	n/a
50	CTCF	chr4:186989214-186989486	MCF-7	breast:	n/a	chr4:186989349-186989365 chr4:186989351-186989364 chr4:186989348-186989366 chr4:186989350-186989371

No.	Distal block	Cell Line	Cell type
1	chr4:186988895..186989419-chr4:187058283..187058978,2	K562	blood:
2	chr4:186988972..186989928-chr4:187122701..187123491,2	MCF-7	breast:
3	chr4:186988859..186989716-chr4:187058329..187059203,5	MCF-7	breast:
4	chr4:186988828..186989568-chr4:187053779..187054412,2	MCF-7	breast:

Variant related genes	Relation type
TLR3	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1023917	chr4:186533075-186997806	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537420	chr4:186533075-186997806	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530178	chr4:186659940-187478310	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1015236	chr4:186696172-187004074	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022661	chr4:186789827-187122464	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv537422	chr4:186789827-187122464	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv1025378	chr4:186907421-187065107	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv537425	chr4:186907421-187065107	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv931977	chr4:186912987-187364756	Active TSS Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv880835	chr4:186929226-187122319	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	nsv461860	chr4:186929226-187131504	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv596389	chr4:186929226-187131504	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
14	nsv1026585	chr4:186929542-187130319	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
15	nsv537426	chr4:186929542-187130319	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
16	nsv881424	chr4:186929646-187015089	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv880572	chr4:186929646-187122319	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
18	nsv881037	chr4:186929646-187127817	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
19	nsv461861	chr4:186929646-187129995	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
20	nsv596390	chr4:186929646-187129995	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
21	nsv880709	chr4:186929646-187131384	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
22	nsv880451	chr4:186929646-187148071	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
23	nsv880596	chr4:186931910-187127817	Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
24	nsv880996	chr4:186931910-187131384	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
25	nsv461863	chr4:186931910-187131504	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
26	nsv470097	chr4:186931910-187131504	Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
27	nsv596391	chr4:186931910-187131504	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
28	nsv428778	chr4:186933032-187056322	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
29	nsv1027118	chr4:186935586-187133222	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
30	nsv537427	chr4:186935586-187133222	Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
31	nsv1027514	chr4:186935786-187133083	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
32	nsv537428	chr4:186935786-187133083	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
33	nsv1015725	chr4:186936404-187130319	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
34	nsv537429	chr4:186936404-187130319	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
35	nsv881454	chr4:186944884-187131384	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
36	nsv869299	chr4:186958290-187192748	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
37	nsv880981	chr4:186961015-187148071	Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
38	nsv880485	chr4:186978366-187148071	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
39	nsv1031258	chr4:186979699-187060255	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
40	esv2830346	chr4:186983342-187044161	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
41	nsv1031814	chr4:186986315-187052824	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs5743305	TLR3	cis	cerebellum	SCAN

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:186988200-186989400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:186988200-186989800	Weak transcription	Brain Germinal Matrix	brain
3	chr4:186988800-186989400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr4:186988800-186989400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:186989000-186989400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr4:186989000-186989400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr4:186989000-186989400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr4:186989000-186989400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:186989000-186989400	Enhancers	Liver	Liver
10	chr4:186989000-186989400	Flanking Active TSS	Brain Hippocampus Middle	brain
11	chr4:186989000-186989400	Enhancers	Brain Substantia Nigra	brain
12	chr4:186989000-186989400	Flanking Active TSS	Colon Smooth Muscle	Colon
13	chr4:186989000-186989400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr4:186989000-186989400	Enhancers	Fetal Muscle Leg	muscle
15	chr4:186989000-186989400	Enhancers	Fetal Stomach	stomach
16	chr4:186989000-186989400	Enhancers	Left Ventricle	heart
17	chr4:186989000-186989400	Enhancers	Right Ventricle	heart
18	chr4:186989000-186989400	Enhancers	HSMM	muscle
19	chr4:186989000-186990000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:186989000-186990800	Active TSS	Rectal Smooth Muscle	rectum
21	chr4:186989000-186991000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr4:186989000-186991000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr4:186989000-186991000	Active TSS	Right Atrium	heart
24	chr4:186989200-186989400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:186989200-186989400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:186989200-186989400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr4:186989200-186989400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr4:186989200-186989400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
29	chr4:186989200-186989400	Enhancers	Primary hematopoietic stem cells	blood
30	chr4:186989200-186989400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr4:186989200-186989400	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr4:186989200-186989400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr4:186989200-186989400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:186989200-186989400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:186989200-186989400	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
36	chr4:186989200-186989400	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr4:186989200-186989400	Enhancers	Fetal Intestine Small	intestine
38	chr4:186989200-186989400	Enhancers	Stomach Mucosa	stomach
39	chr4:186989200-186989400	Enhancers	GM12878-XiMat	blood
40	chr4:186989200-186989400	Enhancers	Hela-S3	cervix
41	chr4:186989200-186989400	Active TSS	NHDF-Ad	bronchial
42	chr4:186989200-186989600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:186989200-186989600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
44	chr4:186989200-186989600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:186989200-186989600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr4:186989200-186989600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr4:186989200-186989600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:186989200-186989600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr4:186989200-186989600	Enhancers	Fetal Intestine Large	intestine
50	chr4:186989200-186989600	Flanking Active TSS	Fetal Kidney	kidney

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