Variant report

Variant	rs57433482
Chromosome Location	chr11:104671713-104671714
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1147011	1.00[AMR][1000 genomes]
rs17093748	0.87[AFR][1000 genomes]
rs17102758	1.00[AMR][1000 genomes]
rs17102887	1.00[AMR][1000 genomes]
rs17103028	1.00[AMR][1000 genomes]
rs17103069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4347361	0.94[AFR][1000 genomes]
rs7127216	1.00[AMR][1000 genomes]
rs7939004	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv826072	chr11:104662708-104768357	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104670400-104671800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr11:104670600-104671800	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr11:104670600-104671800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr11:104670600-104672400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:104670600-104674400	Weak transcription	GM12878-XiMat	blood
6	chr11:104670600-104674600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:104670800-104673600	Weak transcription	Dnd41	blood
8	chr11:104671600-104671800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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