Variant report

Variant	rs574360956
Chromosome Location	chr17:16394750-16394751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16340606..16343390-chr17:16393092..16395708,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175061	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1061463	chr17:16245878-16490691	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
7	nsv543216	chr17:16245878-16490691	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
8	nsv428668	chr17:16265210-16455285	Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	89 gene(s)	inside rSNPs	diseases
9	nsv1063941	chr17:16357086-16424098	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv574487	chr17:16389498-16395496	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv1794587	chr17:16389498-16395680	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
13	esv3323619	chr17:16394252-16396800	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	esv3344255	chr17:16394352-16396600	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16390600-16394800	Weak transcription	Psoas Muscle	Psoas
2	chr17:16392200-16395000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr17:16393800-16394800	Enhancers	Fetal Heart	heart
4	chr17:16393800-16394800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
5	chr17:16394000-16394800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
6	chr17:16394000-16394800	Flanking Active TSS	Brain Anterior Caudate	brain
7	chr17:16394000-16395000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr17:16394000-16395000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
9	chr17:16394000-16396200	Active TSS	H9 Cell Line	embryonic stem cell
10	chr17:16394200-16394800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
11	chr17:16394200-16394800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr17:16394200-16394800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
13	chr17:16394200-16394800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
14	chr17:16394200-16394800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
15	chr17:16394200-16394800	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr17:16394200-16394800	Flanking Active TSS	Brain Angular Gyrus	brain
17	chr17:16394200-16394800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
18	chr17:16394200-16394800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr17:16394200-16394800	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr17:16394200-16394800	Enhancers	Esophagus	oesophagus
21	chr17:16394200-16394800	Flanking Active TSS	Fetal Brain Male	brain
22	chr17:16394200-16394800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
23	chr17:16394200-16394800	Flanking Active TSS	Rectal Smooth Muscle	rectum
24	chr17:16394200-16394800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
25	chr17:16394200-16394800	Flanking Bivalent TSS/Enh	Dnd41	blood
26	chr17:16394200-16394800	Flanking Active TSS	Hela-S3	cervix
27	chr17:16394200-16395000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr17:16394200-16395000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr17:16394200-16395000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr17:16394200-16395000	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr17:16394200-16395000	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr17:16394200-16395000	Flanking Active TSS	Brain Substantia Nigra	brain
33	chr17:16394200-16395000	Flanking Active TSS	Colonic Mucosa	Colon
34	chr17:16394200-16396000	Active TSS	Primary T cells from cord blood	blood
35	chr17:16394400-16394800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr17:16394400-16394800	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr17:16394400-16394800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
38	chr17:16394400-16394800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr17:16394400-16394800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr17:16394400-16394800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr17:16394400-16394800	Flanking Active TSS	Colon Smooth Muscle	Colon
42	chr17:16394400-16394800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr17:16394400-16394800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
44	chr17:16394400-16394800	Enhancers	Lung	lung
45	chr17:16394400-16394800	Flanking Active TSS	Right Atrium	heart
46	chr17:16394400-16395000	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr17:16394400-16395000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr17:16394400-16395000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr17:16394400-16395000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
50	chr17:16394400-16395000	Flanking Active TSS	Primary hematopoietic stem cells	blood

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