Variant report

Variant	rs574365223
Chromosome Location	chr19:27731847-27731848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:27731802..27732517-chr6:28456742..28457568,2	NB4	blood:
2	chr19:27731523..27732363-chr8:52777077..52777577,2	MCF-7	breast:
3	chr19:27731229..27733214-chr8:102884050..102885632,2	MCF-7	breast:
4	chr19:27731712..27733212-chr19:27736249..27738480,2	MCF-7	breast:
5	chr10:71897930..71900730-chr19:27730502..27732728,2	MCF-7	breast:
6	chr19:27731258..27733523-chr2:232326492..232328767,2	MCF-7	breast:
7	chr19:27730503..27733214-chr19:27735926..27737745,2	K562	blood:
8	chr19:27731523..27732363-chr6:45117749..45118249,2	MCF-7	breast:
9	chr1:121483052..121485434-chr19:27730501..27733191,4	MCF-7	breast:
10	chr1:121482676..121485402-chr19:27730501..27733214,12	K562	blood:
11	chr11:37552196..37553062-chr19:27731523..27732023,2	MCF-7	breast:
12	chr10:42528302..42530981-chr19:27731210..27733512,2	MCF-7	breast:
13	chr19:27730503..27732709-chr9:139305201..139307172,2	MCF-7	breast:
14	chr19:27731227..27733512-chr20:55840170..55842696,2	MCF-7	breast:
15	chr12:34844846..34846346-chr19:27730625..27733192,2	K562	blood:
16	chr1:121483185..121485419-chr19:27730521..27734410,16	K562	blood:
17	chr10:42397869..42400416-chr19:27731046..27733513,2	MCF-7	breast:
18	chr19:18390431..18393009-chr19:27731584..27734229,2	MCF-7	breast:
19	chr12:34844825..34846346-chr19:27731692..27733219,2	K562	blood:
20	chr17:59482833..59484547-chr19:27731694..27733523,2	MCF-7	breast:
21	chr1:121482654..121485417-chr19:27730386..27733214,11	MCF-7	breast:
22	chr10:42526475..42528192-chr19:27731227..27733212,2	MCF-7	breast:
23	chr12:34844846..34846346-chr19:27731700..27733247,2	MCF-7	breast:
24	chr17:56707857..56709514-chr19:27731768..27734278,2	MCF-7	breast:
25	chr1:149855028..149856935-chr19:27731051..27732710,2	MCF-7	breast:
26	chr19:27731209..27732712-chr3:104107101..104108601,2	MCF-7	breast:
27	chr19:27731229..27733515-chr19:27737682..27740212,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000101144	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000130522	Chromatin interaction
ENSG00000115053	Chromatin interaction
ENSG00000226308	Chromatin interaction
ENSG00000267959	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398485	chr19:27731783-27736296	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
2	nsv961285	chr19:27731783-28407818	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	esv3349038	chr19:27731786-27732234	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	11 gene(s)	inside rSNPs	n/a
4	esv3359215	chr19:27731806-27732627	ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
5	esv5456	chr19:27731815-27733059	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
6	esv10692	chr19:27731835-27741199	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
7	esv3450512	chr19:27731846-27732174	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:27731800-27732000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:27731800-27732200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
6	chr19:27731800-27732400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	Dnd41	blood
8	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	HSMM	muscle
9	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	K562	blood
10	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	NHLF	lung
11	chr19:27731800-27732600	ZNF genes & repeats	Right Atrium	heart
12	chr19:27731800-27732600	ZNF genes & repeats	HepG2	liver
13	chr19:27731800-27733000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
14	chr19:27731800-27733000	ZNF genes & repeats	Fetal Kidney	kidney
15	chr19:27731800-27733000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
16	chr19:27731800-27733400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr19:27731800-27733400	Flanking Bivalent TSS/Enh	Aorta	Aorta
18	chr19:27731800-27733400	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
19	chr19:27731800-27733400	ZNF genes & repeats	Right Ventricle	heart
20	chr19:27731800-27733400	Flanking Bivalent TSS/Enh	NH-A	brain
21	chr19:27731800-27733400	ZNF genes & repeats	NHEK	skin
22	chr19:27731800-27733600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
23	chr19:27731800-27733600	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr19:27731800-27733600	Flanking Bivalent TSS/Enh	Gastric	stomach
25	chr19:27731800-27733600	Flanking Bivalent TSS/Enh	Hela-S3	cervix
26	chr19:27731800-27734600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr19:27731800-27734600	ZNF genes & repeats	Brain Germinal Matrix	brain
28	chr19:27731800-27734600	ZNF genes & repeats	Placenta	Placenta
29	chr19:27731800-27734800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr19:27731800-27734800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr19:27731800-27734800	ZNF genes & repeats	Esophagus	oesophagus
32	chr19:27731800-27734800	ZNF genes & repeats	Pancreas	Pancrea
33	chr19:27731800-27734800	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
34	chr19:27731800-27734800	ZNF genes & repeats	GM12878-XiMat	blood
35	chr19:27731800-27735000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr19:27731800-27735000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
37	chr19:27731800-27735000	ZNF genes & repeats	Fetal Brain Female	brain
38	chr19:27731800-27735400	ZNF genes & repeats	Fetal Thymus	thymus
39	chr19:27731800-27736200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr19:27731800-27737000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
41	chr19:27731800-27737000	ZNF genes & repeats	Osteobl	bone
42	chr19:27731800-27738600	ZNF genes & repeats	Thymus	Thymus
43	chr19:27731800-27739000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
44	chr19:27731800-27739600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
45	chr19:27731800-27739600	ZNF genes & repeats	Brain Hippocampus Middle	brain
46	chr19:27731800-27739600	ZNF genes & repeats	Fetal Intestine Large	intestine
47	chr19:27731800-27739600	ZNF genes & repeats	Ovary	ovary
48	chr19:27731800-27739600	ZNF genes & repeats	Spleen	Spleen
49	chr19:27731800-27739800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr19:27731800-27739800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood

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