Variant report

Variant	rs57436617
Chromosome Location	chr16:70706041-70706042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70704267..70706050-chr16:70717985..70719949,2	MCF-7	breast:
2	chr16:70700778..70704017-chr16:70704220..70706631,3	K562	blood:
3	chr16:70703850..70706247-chr16:70735267..70737927,2	MCF-7	breast:
4	chr16:70704478..70706991-chr16:70709416..70711257,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11861194	1.00[AMR][1000 genomes]
rs11862112	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11862154	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56694912	1.00[AMR][1000 genomes]
rs58623884	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7188599	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517391	chr16:70666410-70840490	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv457517	chr16:70666722-70840490	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv572945	chr16:70666722-70840490	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv906874	chr16:70677785-70740707	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv906875	chr16:70677785-70742536	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv906876	chr16:70677785-70757555	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv906877	chr16:70677785-70766378	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv906878	chr16:70677785-70782922	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv906879	chr16:70677785-70790831	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv906880	chr16:70677785-70796515	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	nsv906882	chr16:70690989-70725815	Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
12	nsv572946	chr16:70694000-70740707	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
13	nsv471094	chr16:70694000-70749970	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
14	nsv906884	chr16:70696009-70725815	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv906885	chr16:70696367-70742536	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70688400-70715000	Weak transcription	Stomach Mucosa	stomach
2	chr16:70694600-70720200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:70695600-70712600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr16:70695600-70714200	Strong transcription	Placenta	Placenta
5	chr16:70695600-70714400	Strong transcription	Muscle Satellite Cultured Cells	--
6	chr16:70695600-70714400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr16:70695600-70714400	Strong transcription	Lung	lung
8	chr16:70695600-70714600	Strong transcription	Liver	Liver
9	chr16:70695800-70713800	Strong transcription	Fetal Intestine Large	intestine
10	chr16:70695800-70714200	Strong transcription	NHDF-Ad	bronchial
11	chr16:70696000-70707000	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr16:70696000-70714200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr16:70696000-70714200	Strong transcription	Fetal Thymus	thymus
14	chr16:70696400-70713400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr16:70696400-70714200	Strong transcription	Fetal Intestine Small	intestine
16	chr16:70696600-70713400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr16:70696600-70714200	Strong transcription	Fetal Lung	lung
18	chr16:70696800-70713600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr16:70696800-70714200	Strong transcription	Osteobl	bone
20	chr16:70697200-70709800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr16:70697200-70709800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr16:70697200-70713400	Strong transcription	Adipose Nuclei	Adipose
23	chr16:70697400-70713400	Strong transcription	A549	lung
24	chr16:70697600-70709800	Strong transcription	Stomach Smooth Muscle	stomach
25	chr16:70697600-70713000	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr16:70697600-70713600	Strong transcription	Fetal Stomach	stomach
27	chr16:70697600-70713600	Strong transcription	Ovary	ovary
28	chr16:70697600-70713800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr16:70697600-70714200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr16:70698000-70712200	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr16:70698000-70713200	Strong transcription	HSMMtube	muscle
32	chr16:70698000-70714400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr16:70698600-70708200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr16:70698800-70711600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr16:70698800-70713400	Strong transcription	NHLF	lung
36	chr16:70699000-70710200	Strong transcription	Fetal Muscle Leg	muscle
37	chr16:70699200-70711200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr16:70699600-70713400	Strong transcription	HSMM	muscle
39	chr16:70700000-70707200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr16:70700000-70708200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr16:70700200-70708200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr16:70700200-70708200	Weak transcription	Gastric	stomach
43	chr16:70700400-70706800	Weak transcription	Pancreas	Pancrea
44	chr16:70700400-70711000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr16:70700400-70718800	Weak transcription	Small Intestine	intestine
46	chr16:70700600-70711400	Weak transcription	Colonic Mucosa	Colon
47	chr16:70701000-70708000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr16:70701000-70708200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr16:70701000-70714200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr16:70701200-70708000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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