Variant report

Variant	rs57439426
Chromosome Location	chr5:75667780-75667781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr5:75667721-75668014	MCF10A-Er-Src	breast:	n/a	n/a
2	JUND	chr5:75667737-75669109	HCT-116	colon:	n/a	chr5:75668610-75668619 chr5:75668609-75668621 chr5:75668611-75668620 chr5:75668609-75668620 chr5:75667860-75667867 chr5:75668565-75668572 chr5:75667860-75667868 chr5:75668563-75668573 chr5:75668611-75668619 chr5:75668562-75668574 chr5:75668564-75668572 chr5:75667860-75667868 chr5:75668611-75668618 chr5:75668564-75668572 chr5:75668610-75668620 chr5:75668471-75668485 chr5:75668563-75668573
3	FOS	chr5:75667675-75668039	MCF10A-Er-Src	breast:	n/a	chr5:75667860-75667867 chr5:75667860-75667868 chr5:75667860-75667868
4	FOSL1	chr5:75667642-75669054	HCT-116	colon:	n/a	chr5:75668610-75668619 chr5:75668609-75668621 chr5:75668611-75668620 chr5:75667860-75667867 chr5:75668565-75668572 chr5:75667860-75667868 chr5:75668563-75668573 chr5:75668611-75668619 chr5:75668562-75668574 chr5:75668564-75668572 chr5:75668609-75668620 chr5:75667860-75667868 chr5:75668611-75668618 chr5:75668564-75668572 chr5:75668610-75668620 chr5:75668471-75668485 chr5:75668563-75668573
5	FOS	chr5:75667724-75668051	MCF10A-Er-Src	breast:	n/a	chr5:75667860-75667867 chr5:75667860-75667868 chr5:75667860-75667868
6	STAT3	chr5:75667706-75667906	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr5:75667665-75668006	MCF10A-Er-Src	breast:	n/a	chr5:75667860-75667867 chr5:75667860-75667868 chr5:75667860-75667868
8	STAT3	chr5:75667691-75668015	MCF10A-Er-Src	breast:	n/a	n/a
9	STAT3	chr5:75667696-75667979	MCF10A-Er-Src	breast:	n/a	n/a
10	JUN	chr5:75667630-75669245	K562	blood:	n/a	chr5:75668610-75668619 chr5:75668609-75668621 chr5:75668611-75668620 chr5:75667860-75667867 chr5:75668565-75668572 chr5:75667860-75667868 chr5:75668563-75668573 chr5:75668611-75668619 chr5:75668562-75668574 chr5:75668564-75668572 chr5:75667860-75667868 chr5:75668611-75668618 chr5:75668564-75668572 chr5:75668610-75668620 chr5:75668471-75668485 chr5:75668563-75668573
11	FOS	chr5:75667714-75668053	MCF10A-Er-Src	breast:	n/a	chr5:75667860-75667867 chr5:75667860-75667868 chr5:75667860-75667868

No.	Distal block	Cell Line	Cell type
1	chr5:75630696..75632382-chr5:75666521..75668676,2	K562	blood:
2	chr5:75663384..75665585-chr5:75666962..75670034,4	K562	blood:
3	chr5:75661896..75664884-chr5:75666923..75670034,3	K562	blood:
4	chr5:75667400..75670922-chr5:75672523..75674364,4	K562	blood:

Variant related genes	Relation type
ENSG00000251235	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv328635	chr5:75667780-75669370	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75660200-75667800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:75660200-75667800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:75660200-75668000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:75660400-75667800	Weak transcription	HepG2	liver
5	chr5:75660400-75668000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr5:75663000-75667800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:75663800-75668200	Weak transcription	Spleen	Spleen
8	chr5:75664000-75667800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:75664200-75667800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:75664200-75667800	Weak transcription	NHEK	skin
11	chr5:75664200-75668000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr5:75664400-75667800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr5:75664400-75668000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:75665000-75667800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr5:75665400-75667800	Weak transcription	A549	lung
16	chr5:75667200-75667800	Enhancers	K562	blood
17	chr5:75667200-75668800	Enhancers	Pancreas	Pancrea
18	chr5:75667200-75669000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:75667200-75669000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr5:75667200-75669000	Enhancers	Placenta	Placenta
21	chr5:75667400-75669000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:75667600-75669000	Enhancers	HMEC	breast

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