Variant report

Variant	rs574408033
Chromosome Location	chr7:66785299-66785300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TYW1-7	chr7:66785238-66785396	NONHSAT121275

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1027702	chr7:66722103-66841913	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1031048	chr7:66722103-66844039	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv970873	chr7:66785229-66793852	Weak transcription Strong transcription Enhancers Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66769000-66785400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:66769400-66785600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:66770000-66785400	Strong transcription	Stomach Smooth Muscle	stomach
4	chr7:66770200-66785800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:66770400-66786200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:66770400-66786800	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:66770600-66785400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:66770600-66786400	Weak transcription	Fetal Heart	heart
9	chr7:66770800-66786800	Strong transcription	Liver	Liver
10	chr7:66771000-66785800	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:66771400-66785600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:66771800-66786000	Strong transcription	Fetal Intestine Large	intestine
13	chr7:66771800-66786200	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr7:66772200-66786200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr7:66772600-66785600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:66772600-66786200	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr7:66774200-66785800	Weak transcription	Stomach Mucosa	stomach
18	chr7:66775200-66807600	Weak transcription	Colonic Mucosa	Colon
19	chr7:66775600-66786200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:66775800-66786400	Weak transcription	NHLF	lung
21	chr7:66777000-66786000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:66777200-66789400	Weak transcription	NHDF-Ad	bronchial
23	chr7:66777200-66805200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr7:66777400-66785400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:66777400-66787000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:66777600-66786200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:66777600-66786600	Weak transcription	HMEC	breast
28	chr7:66778400-66787200	Weak transcription	Pancreas	Pancrea
29	chr7:66778800-66809000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:66779000-66787200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr7:66779600-66786600	Weak transcription	HSMM	muscle
32	chr7:66779800-66807600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr7:66780000-66786800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:66780200-66786800	Weak transcription	Osteobl	bone
35	chr7:66780200-66788800	Weak transcription	Aorta	Aorta
36	chr7:66780400-66787000	Weak transcription	K562	blood
37	chr7:66780400-66788200	Weak transcription	NHEK	skin
38	chr7:66780400-66790800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:66780400-66791000	Weak transcription	Primary B cells from cord blood	blood
40	chr7:66780400-66791800	Weak transcription	Fetal Lung	lung
41	chr7:66780400-66804600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr7:66780400-66808200	Weak transcription	GM12878-XiMat	blood
43	chr7:66780400-66809400	Weak transcription	A549	lung
44	chr7:66781200-66804600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:66781400-66788400	Weak transcription	Gastric	stomach
46	chr7:66781400-66788800	Weak transcription	Esophagus	oesophagus
47	chr7:66781400-66792200	Weak transcription	Brain Germinal Matrix	brain
48	chr7:66781400-66810200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr7:66781800-66786000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr7:66782200-66788200	Weak transcription	Ovary	ovary

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