Variant report

Variant	rs574424
Chromosome Location	chr17:67347397-67347398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs477130	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs494251	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs553828	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833527	chr17:67240575-67400871	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3517126	chr17:67343157-67349955	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3517131	chr17:67343607-67349805	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv2546518	chr17:67343775-67349517	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv2049701	chr17:67344218-67349010	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv3314890	chr17:67344232-67348932	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3517127	chr17:67344263-67348904	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3314885	chr17:67344288-67348898	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3517128	chr17:67344291-67349044	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3314887	chr17:67344292-67348864	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3517130	chr17:67344312-67348873	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv3314889	chr17:67344322-67348893	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3314888	chr17:67344350-67348829	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv3314891	chr17:67344364-67348828	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv3517132	chr17:67344364-67348828	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv16992	chr17:67344391-67348779	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	nsv522420	chr17:67345358-67357573	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67339400-67355200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr17:67345400-67349400	Weak transcription	Fetal Intestine Large	intestine
3	chr17:67346200-67347400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr17:67346200-67347400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr17:67346800-67347400	Enhancers	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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