Variant report

Variant	rs5744332
Chromosome Location	chr1:86943413-86943414
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11799749	1.00[AMR][1000 genomes]
rs5744312	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5744319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58279400	1.00[AMR][1000 genomes]
rs72951845	1.00[AMR][1000 genomes]
rs72951849	1.00[AMR][1000 genomes]
rs72951852	1.00[AMR][1000 genomes]
rs72951856	1.00[AMR][1000 genomes]
rs72951859	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86942800-86944400	Enhancers	Fetal Stomach	stomach
2	chr1:86943000-86944800	Enhancers	Fetal Lung	lung
3	chr1:86943200-86943600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr1:86943200-86944200	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:86943200-86945400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:86943400-86943600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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