Variant report

Variant	rs574434307
Chromosome Location	chr2:115921558-115921559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115920200-115921600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:115920400-115921800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:115920600-115921600	Active TSS	Brain Angular Gyrus	brain
4	chr2:115920600-115921600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr2:115920600-115921600	Bivalent/Poised TSS	Fetal Brain Male	brain
6	chr2:115921000-115921600	Bivalent Enhancer	Fetal Intestine Large	intestine
7	chr2:115921200-115921600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr2:115921200-115921600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:115921200-115921600	Active TSS	Fetal Brain Female	brain
10	chr2:115921400-115921800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
11	chr2:115921400-115922400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr2:115921400-115923400	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:115921400-115927800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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