Variant report

Variant	rs574436022
Chromosome Location	chr20:15641046-15641047
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3324826	chr20:15640298-15642109	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3488053	chr20:15640360-15642158	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3488054	chr20:15640360-15642158	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15634000-15641200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:15639600-15641200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr20:15639600-15641200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr20:15639600-15641200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr20:15640200-15641200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr20:15640800-15642400	Enhancers	NHDF-Ad	bronchial
7	chr20:15641000-15641200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr20:15641000-15641200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr20:15641000-15642000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links