Variant report

Variant	rs5744383
Chromosome Location	chr1:86955840-86955841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10493792	1.00[AMR][1000 genomes]
rs17129188	1.00[AMR][1000 genomes]
rs5744310	1.00[AMR][1000 genomes]
rs5744359	1.00[AMR][1000 genomes]
rs61741894	1.00[AMR][1000 genomes]
rs977920	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86953800-86956400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:86953800-86956400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:86953800-86956800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:86955200-86956600	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:86955400-86966400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:86955800-86957000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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