Variant report

Variant	rs574446854
Chromosome Location	chr7:124312200-124312201
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1027091	chr7:124311742-124388908	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124308000-124312200	Weak transcription	Fetal Lung	lung
2	chr7:124308200-124313400	Weak transcription	Placenta	Placenta
3	chr7:124310600-124312800	Enhancers	NHEK	skin
4	chr7:124311000-124312400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:124311000-124312400	Enhancers	HMEC	breast
6	chr7:124311200-124312400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:124311200-124312600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:124312000-124312400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr7:124312200-124313800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:124312200-124313800	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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