Variant report

Variant	rs5744590
Chromosome Location	chr5:74842292-74842293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74840733..74842326-chr5:74845611..74848333,2	K562	blood:

Variant related genes	Relation type
ENSG00000122008	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1004201	1.00[EUR][1000 genomes]
rs1363460	1.00[EUR][1000 genomes]
rs16872663	1.00[EUR][1000 genomes]
rs17244862	1.00[EUR][1000 genomes]
rs1820647	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3097154	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3889900	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs5744573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5744574	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5744607	1.00[CEU][hapmap]
rs5744614	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5744690	1.00[CEU][hapmap]
rs5744702	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58548840	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58900885	1.00[EUR][1000 genomes]
rs59896135	1.00[EUR][1000 genomes]
rs6885301	1.00[EUR][1000 genomes]
rs7708710	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882193	chr5:74656175-74917862	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv882194	chr5:74656175-74946455	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv882195	chr5:74678937-74896798	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv882196	chr5:74678937-74917862	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv882197	chr5:74692776-74946455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv882198	chr5:74736065-74896798	Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv882199	chr5:74757758-74946455	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv882201	chr5:74787310-74890618	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
10	nsv882202	chr5:74808417-74946455	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
11	esv3385195	chr5:74810245-74843686	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv882204	chr5:74811497-74856142	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv882205	chr5:74811497-74862921	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74808800-74849600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:74810400-74862400	Weak transcription	Hela-S3	cervix
3	chr5:74818200-74897400	Weak transcription	Thymus	Thymus
4	chr5:74819400-74846800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:74822800-74896000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr5:74826000-74862400	Weak transcription	Fetal Heart	heart
7	chr5:74831000-74848000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:74831000-74852600	Weak transcription	Aorta	Aorta
9	chr5:74831000-74859000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:74831000-74862400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr5:74831200-74848200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr5:74831200-74848600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr5:74831200-74877200	Weak transcription	Fetal Kidney	kidney
14	chr5:74831400-74845600	Weak transcription	Fetal Lung	lung
15	chr5:74831400-74847400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:74831400-74848000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:74831400-74848000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:74831400-74848000	Weak transcription	Liver	Liver
19	chr5:74831400-74848200	Weak transcription	Fetal Intestine Large	intestine
20	chr5:74831400-74848400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr5:74831400-74848600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr5:74831400-74848600	Weak transcription	HSMMtube	muscle
23	chr5:74831800-74849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr5:74832400-74859000	Weak transcription	Brain Angular Gyrus	brain
25	chr5:74832600-74848400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:74832600-74848400	Weak transcription	Colon Smooth Muscle	Colon
27	chr5:74832800-74847800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:74832800-74848000	Weak transcription	NH-A	brain
29	chr5:74832800-74848200	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr5:74832800-74848200	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:74832800-74848400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr5:74832800-74861400	Weak transcription	Gastric	stomach
33	chr5:74833000-74845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:74833000-74846000	Weak transcription	NHDF-Ad	bronchial
35	chr5:74833000-74846400	Weak transcription	Dnd41	blood
36	chr5:74833000-74847000	Weak transcription	Osteobl	bone
37	chr5:74833000-74847400	Weak transcription	HMEC	breast
38	chr5:74833000-74848200	Weak transcription	Adipose Nuclei	Adipose
39	chr5:74833000-74848200	Weak transcription	Placenta	Placenta
40	chr5:74833000-74848600	Weak transcription	K562	blood
41	chr5:74833000-74849400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr5:74833000-74855400	Weak transcription	Esophagus	oesophagus
43	chr5:74833000-74860600	Weak transcription	A549	lung
44	chr5:74833000-74861600	Weak transcription	Spleen	Spleen
45	chr5:74833200-74862600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr5:74833400-74844800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr5:74833400-74848400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr5:74833400-74850000	Weak transcription	Left Ventricle	heart
49	chr5:74833400-74850400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr5:74833400-74851000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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