Variant report

Variant rs574472377
Chromosome Location chr1:172795429-172795430
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172788800-172797000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:172789000-172796600 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr1:172789000-172797000 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr1:172791200-172806200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:172792000-172795600 Weak transcription K562 blood
6 chr1:172793200-172795600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr1:172793600-172795600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr1:172793800-172795600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:172794800-172795800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr1:172794800-172796000 Enhancers HSMM muscle
11 chr1:172795000-172796200 Enhancers Fetal Intestine Small intestine
12 chr1:172795000-172797200 Enhancers Dnd41 blood
13 chr1:172795200-172795600 Enhancers Primary B cells from cord blood blood
14 chr1:172795200-172795600 Active TSS Brain Anterior Caudate brain
15 chr1:172795200-172796000 Enhancers Primary monocytes fromperipheralblood blood
16 chr1:172795200-172796000 Enhancers Primary B cells from peripheral blood blood
17 chr1:172795200-172796000 Active TSS Stomach Smooth Muscle stomach
18 chr1:172795200-172796200 Enhancers Colon Smooth Muscle Colon
19 chr1:172795200-172796600 Enhancers Primary hematopoietic stem cells blood
20 chr1:172795200-172797400 Enhancers Primary T helper cells fromperipheralblood blood
21 chr1:172795200-172797600 Enhancers Primary T helper cells PMA-I stimulated --
22 chr1:172795200-172797800 Enhancers Primary T helper 17 cells PMA-I stimulated --
23 chr1:172795400-172795600 Enhancers iPS-15b Cell Line embryonic stem cell
24 chr1:172795400-172795600 Active TSS Brain Cingulate Gyrus brain
25 chr1:172795400-172795600 Active TSS Brain Hippocampus Middle brain
26 chr1:172795400-172795600 Active TSS Brain Dorsolateral Prefrontal Cortex brain
27 chr1:172795400-172795600 Active TSS Duodenum Smooth Muscle Duodenum
28 chr1:172795400-172795600 Enhancers Ovary ovary
29 chr1:172795400-172795600 Flanking Active TSS Rectal Mucosa Donor 29 rectum
30 chr1:172795400-172795600 Enhancers Skeletal Muscle Male skeletal muscle
31 chr1:172795400-172795600 Bivalent Enhancer GM12878-XiMat blood
32 chr1:172795400-172795600 Active TSS HepG2 liver
33 chr1:172795400-172795600 Enhancers Osteobl bone
34 chr1:172795400-172795800 Enhancers H1 Cell Line embryonic stem cell
35 chr1:172795400-172795800 Flanking Active TSS HUES48 Cell Line embryonic stem cell
36 chr1:172795400-172795800 Enhancers HUES64 Cell Line embryonic stem cell
37 chr1:172795400-172795800 Enhancers iPS-20b Cell Line embryonic stem cell
38 chr1:172795400-172795800 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr1:172795400-172795800 Enhancers Breast Myoepithelial Primary Cells Breast
40 chr1:172795400-172795800 Enhancers Primary Natural Killer cells fromperipheralblood blood
41 chr1:172795400-172795800 Flanking Active TSS Muscle Satellite Cultured Cells --
42 chr1:172795400-172795800 Flanking Active TSS Liver Liver
43 chr1:172795400-172795800 Flanking Active TSS Brain Angular Gyrus brain
44 chr1:172795400-172795800 Enhancers Fetal Brain Male brain
45 chr1:172795400-172795800 Enhancers Fetal Kidney kidney
46 chr1:172795400-172795800 Enhancers Placenta Placenta
47 chr1:172795400-172795800 Enhancers Psoas Muscle Psoas
48 chr1:172795400-172795800 Flanking Active TSS Stomach Mucosa stomach
49 chr1:172795400-172795800 Flanking Active TSS A549 lung
50 chr1:172795400-172796000 Enhancers ES-I3 Cell Line embryonic stem cell

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