Variant report

Variant	rs574482697
Chromosome Location	chr10:116579594-116579595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:21)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:21 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr10:116579080-116579652	MCF-7	breast:	n/a	n/a
2	GATA3	chr10:116578787-116580038	MCF-7	breast:	n/a	n/a
3	FOSL2	chr10:116579060-116579619	MCF-7	breast:	n/a	n/a
4	ZNF217	chr10:116579132-116579697	MCF-7	breast:	n/a	n/a
5	EP300	chr10:116579050-116579624	MCF-7	breast:	n/a	n/a
6	GATA3	chr10:116579129-116579601	T-47D	breast:	n/a	n/a
7	RFX5	chr10:116579100-116579798	Hela-S3	cervix:	n/a	n/a
8	FOXM1	chr10:116579099-116579595	MCF-7	breast:	n/a	n/a
9	TCF7L2	chr10:116579228-116579601	Hela-S3	cervix:	n/a	n/a
10	JUND	chr10:116579052-116579681	T-47D	breast:	n/a	n/a
11	FOSL2	chr10:116579115-116579695	MCF-7	breast:	n/a	n/a
12	JUND	chr10:116579075-116579733	MCF-7	breast:	n/a	n/a
13	GATA3	chr10:116579191-116579627	MCF-7	breast:	n/a	n/a
14	HDAC2	chr10:116579129-116579635	MCF-7	breast:	n/a	n/a
15	GATA3	chr10:116578970-116579878	MCF-7	breast:	n/a	n/a
16	GATA3	chr10:116578871-116579622	MCF-7	breast:	n/a	n/a
17	SIN3AK20	chr10:116579030-116579789	MCF-7	breast:	n/a	n/a
18	SIN3AK20	chr10:116578930-116579787	MCF-7	breast:	n/a	n/a
19	FOXM1	chr10:116578970-116579737	MCF-7	breast:	n/a	n/a
20	EP300	chr10:116579077-116579599	Hela-S3	cervix:	n/a	n/a
21	JUND	chr10:116579063-116579617	MCF-7	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:116567584..116574580-chr10:116575101..116583231,11	MCF-7	breast:
2	chr10:116579148..116581126-chr10:116581176..116582786,3	MCF-7	breast:
3	chr10:116296905..116298827-chr10:116577093..116580051,2	MCF-7	breast:
4	chr10:116575494..116578184-chr10:116579422..116580946,2	K562	blood:
5	chr10:116577691..116581134-chr10:116581459..116583772,3	MCF-7	breast:
6	chr10:116564843..116568193-chr10:116577870..116580490,3	MCF-7	breast:

No data

Variant related genes	Relation type
FAM160B1	TF binding region
ENSG00000215760	Chromatin interaction
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv518081	chr10:116576189-116582502	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3338822	chr10:116579462-116583960	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116569800-116580600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:116571000-116580600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:116572200-116580600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:116572200-116580800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:116576000-116581000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:116576000-116581000	Weak transcription	NHDF-Ad	bronchial
7	chr10:116576200-116579600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:116576200-116581000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:116576400-116579600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:116578800-116580600	Enhancers	Hela-S3	cervix
11	chr10:116579000-116579600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:116579000-116579600	Enhancers	GM12878-XiMat	blood
13	chr10:116579000-116580600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr10:116579000-116580600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:116579200-116580600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:116579400-116579800	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:116579400-116579800	Flanking Active TSS	Osteobl	bone
18	chr10:116579400-116580600	Weak transcription	A549	lung
19	chr10:116579400-116580600	Weak transcription	NH-A	brain
20	chr10:116579400-116581000	Enhancers	Liver	Liver
21	chr10:116579400-116583600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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