Variant report

Variant	rs574496749
Chromosome Location	chr17:38377261-38377262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38375087..38377704-chr17:38472815..38475239,3	MCF-7	breast:
2	chr14:71374178..71375131-chr17:38377088..38378038,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction
ENSG00000100731	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv525796	chr17:38306365-38405037	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3381533	chr17:38377176-38379374	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38374600-38377800	Active TSS	Brain Angular Gyrus	brain
2	chr17:38376200-38377800	Enhancers	Spleen	Spleen
3	chr17:38376400-38377400	Enhancers	Small Intestine	intestine
4	chr17:38376600-38377400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr17:38376600-38377400	Enhancers	Fetal Muscle Trunk	muscle
6	chr17:38376600-38377400	Enhancers	Placenta	Placenta
7	chr17:38376600-38377400	Enhancers	Lung	lung
8	chr17:38376600-38377600	Enhancers	Primary hematopoietic stem cells	blood
9	chr17:38376600-38377600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr17:38376600-38377600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr17:38376600-38377600	Enhancers	Brain Substantia Nigra	brain
12	chr17:38376600-38377800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr17:38376600-38377800	Enhancers	Primary B cells from peripheral blood	blood
14	chr17:38376600-38377800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr17:38376600-38377800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr17:38376600-38377800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr17:38376600-38377800	Enhancers	Liver	Liver
18	chr17:38376600-38378200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr17:38376600-38378800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr17:38376600-38380000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr17:38376600-38380200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr17:38376600-38380800	Weak transcription	Colon Smooth Muscle	Colon
23	chr17:38376600-38380800	Weak transcription	Fetal Lung	lung
24	chr17:38376600-38389200	Weak transcription	Esophagus	oesophagus
25	chr17:38376600-38389800	Weak transcription	Colonic Mucosa	Colon
26	chr17:38376600-38389800	Weak transcription	Ovary	ovary
27	chr17:38376600-38390400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr17:38376600-38392200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr17:38376600-38393200	Weak transcription	Fetal Heart	heart
30	chr17:38376600-38400400	Weak transcription	Psoas Muscle	Psoas
31	chr17:38376600-38412400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr17:38376600-38416800	Weak transcription	Aorta	Aorta
33	chr17:38376800-38377400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr17:38376800-38377400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr17:38376800-38377400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr17:38376800-38377400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr17:38376800-38377400	Enhancers	Adipose Nuclei	Adipose
38	chr17:38376800-38377400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr17:38376800-38377400	Enhancers	Fetal Muscle Leg	muscle
40	chr17:38376800-38377400	Enhancers	Gastric	stomach
41	chr17:38376800-38377400	Weak transcription	A549	lung
42	chr17:38376800-38377400	Weak transcription	GM12878-XiMat	blood
43	chr17:38376800-38377400	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr17:38376800-38377400	Weak transcription	NHEK	skin
45	chr17:38376800-38377600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr17:38376800-38377600	Enhancers	Primary T cells from cord blood	blood
47	chr17:38376800-38377600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr17:38376800-38377600	Enhancers	Muscle Satellite Cultured Cells	--
49	chr17:38376800-38377600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr17:38376800-38377600	Enhancers	Brain Hippocampus Middle	brain

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