Variant report

Variant	rs574517177
Chromosome Location	chr6:128433625-128433626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128427870..128430111-chr6:128432750..128435472,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031827	chr6:128418702-128497881	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2763955	chr6:128418714-128436415	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv604645	chr6:128421762-128437136	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv528869	chr6:128421762-128496557	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv16561	chr6:128432770-128437573	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128375000-128433800	Weak transcription	Aorta	Aorta
2	chr6:128404000-128438000	Weak transcription	Fetal Thymus	thymus
3	chr6:128411200-128433800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:128411200-128433800	Weak transcription	Fetal Stomach	stomach
5	chr6:128411200-128433800	Weak transcription	Ovary	ovary
6	chr6:128411600-128445600	Weak transcription	HepG2	liver
7	chr6:128419800-128434800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:128419800-128455600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:128425000-128452600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:128425200-128435200	Weak transcription	Gastric	stomach
11	chr6:128428000-128452000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:128431400-128433800	Enhancers	Brain Substantia Nigra	brain
13	chr6:128431800-128433800	Enhancers	Fetal Heart	heart
14	chr6:128432200-128433800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:128432200-128433800	Weak transcription	Fetal Brain Male	brain
16	chr6:128432200-128448200	Weak transcription	Primary B cells from cord blood	blood
17	chr6:128432400-128433800	Enhancers	Fetal Lung	lung
18	chr6:128432800-128433800	Enhancers	Brain Cingulate Gyrus	brain
19	chr6:128433400-128434200	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr6:128433400-128434400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr6:128433600-128433800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:128433600-128433800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr6:128433600-128433800	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr6:128433600-128433800	Flanking Active TSS	Colon Smooth Muscle	Colon
25	chr6:128433600-128433800	Enhancers	Pancreas	Pancrea
26	chr6:128433600-128433800	Flanking Active TSS	Psoas Muscle	Psoas
27	chr6:128433600-128433800	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr6:128433600-128433800	Enhancers	Dnd41	blood
29	chr6:128433600-128433800	Enhancers	HSMM	muscle
30	chr6:128433600-128434000	Flanking Active TSS	Primary T cells from cord blood	blood
31	chr6:128433600-128434000	Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr6:128433600-128434000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:128433600-128434000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:128433600-128434000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:128433600-128434000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:128433600-128434000	Active TSS	Liver	Liver
37	chr6:128433600-128434000	Active TSS	Duodenum Mucosa	Duodenum
38	chr6:128433600-128434000	Active TSS	Fetal Intestine Large	intestine
39	chr6:128433600-128434000	Active TSS	Fetal Intestine Small	intestine
40	chr6:128433600-128434000	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr6:128433600-128434000	Active TSS	Rectal Smooth Muscle	rectum
42	chr6:128433600-128434000	Active TSS	NHLF	lung
43	chr6:128433600-128434200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:128433600-128434200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:128433600-128434200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
46	chr6:128433600-128434200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
47	chr6:128433600-128434200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:128433600-128434200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:128433600-128434200	Flanking Active TSS	Brain Angular Gyrus	brain
50	chr6:128433600-128434200	Active TSS	Brain Anterior Caudate	brain

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