Variant report

Variant	rs57451800
Chromosome Location	chr13:97939105-97939106
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97933982..97936266-chr13:97936651..97939517,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73559979	1.00[AMR][1000 genomes]
rs74109435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74109437	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
2	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr13:97929000-97947200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr13:97929400-97955000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr13:97929600-97953400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr13:97929800-97953200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:97929800-97953400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:97931000-97953600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr13:97931200-97949000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr13:97932200-97941200	Enhancers	Brain Substantia Nigra	brain
11	chr13:97933000-97947800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr13:97933000-97953600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr13:97933200-97939200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr13:97933200-97939800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr13:97933200-97943000	Weak transcription	Osteobl	bone
16	chr13:97933200-97946600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr13:97933200-97946600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr13:97933200-97947400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr13:97933200-97949600	Weak transcription	Primary B cells from peripheral blood	blood
20	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
21	chr13:97933400-97940600	Weak transcription	Fetal Kidney	kidney
22	chr13:97933400-97952400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr13:97933600-97943200	Enhancers	Brain Hippocampus Middle	brain
24	chr13:97933600-97949200	Weak transcription	K562	blood
25	chr13:97933600-97953600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr13:97933800-97940600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr13:97933800-97947000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr13:97934000-97954400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr13:97934200-97939200	Enhancers	Psoas Muscle	Psoas
30	chr13:97934800-97939200	Enhancers	HSMM	muscle
31	chr13:97935000-97939600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr13:97935000-97940000	Enhancers	Brain Angular Gyrus	brain
33	chr13:97935600-97939800	Enhancers	Brain Anterior Caudate	brain
34	chr13:97935600-97943000	Weak transcription	Esophagus	oesophagus
35	chr13:97935600-97947000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr13:97935600-97947200	Weak transcription	NHDF-Ad	bronchial
37	chr13:97935600-97954800	Weak transcription	Colonic Mucosa	Colon
38	chr13:97935800-97943000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr13:97935800-97943000	Weak transcription	NH-A	brain
40	chr13:97935800-97947400	Weak transcription	Stomach Mucosa	stomach
41	chr13:97935800-97949400	Weak transcription	Primary B cells from cord blood	blood
42	chr13:97936200-97940400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr13:97936200-97942000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr13:97936200-97943000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr13:97936200-97947200	Weak transcription	Aorta	Aorta
46	chr13:97936400-97942200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr13:97936400-97943000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr13:97936400-97943000	Weak transcription	HMEC	breast
49	chr13:97936600-97942400	Weak transcription	GM12878-XiMat	blood
50	chr13:97936800-97939200	Strong transcription	Primary T cells from cord blood	blood

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