Variant report

Variant	rs57451922
Chromosome Location	chr2:231492763-231492764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10192285	0.93[AMR][1000 genomes]
rs11894261	0.85[AFR][1000 genomes]
rs11899262	0.81[AMR][1000 genomes]
rs13401455	0.81[AFR][1000 genomes]
rs57713836	0.93[AMR][1000 genomes]
rs58535872	0.95[AFR][1000 genomes]
rs61480574	0.95[AFR][1000 genomes]
rs61488557	0.95[AFR][1000 genomes]
rs7579345	0.93[AMR][1000 genomes]
rs7579448	0.87[AMR][1000 genomes]
rs7595821	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875955	chr2:231440555-231500805	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231472800-231497200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:231481800-231493000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:231492400-231492800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:231492400-231492800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:231492400-231493400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr2:231492400-231493400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr2:231492600-231492800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:231492600-231493200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr2:231492600-231493200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr2:231492600-231493200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr2:231492600-231493400	Enhancers	Esophagus	oesophagus
12	chr2:231492600-231493400	Enhancers	Fetal Heart	heart
13	chr2:231492600-231493400	Enhancers	Pancreas	Pancrea
14	chr2:231492600-231493400	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr2:231492600-231493400	Flanking Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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