Variant report

Variant	rs5745349
Chromosome Location	chr1:76274805-76274806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1146647	0.87[YRI][hapmap]
rs5745333	1.00[AFR][1000 genomes]
rs5745338	1.00[AFR][1000 genomes]
rs5745399	0.87[YRI][hapmap]
rs5745419	1.00[YRI][hapmap]
rs57765106	0.92[AFR][1000 genomes]
rs74090748	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1795237	chr1:76268573-76383565	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1800125	chr1:76269439-76379497	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1799260	chr1:76269439-76383297	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1847721	chr1:76269439-76383565	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76262400-76282800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:76262600-76288800	Weak transcription	Brain Substantia Nigra	brain
3	chr1:76262600-76294600	Weak transcription	Primary B cells from cord blood	blood
4	chr1:76263000-76276600	Weak transcription	Gastric	stomach
5	chr1:76263000-76287400	Weak transcription	Aorta	Aorta
6	chr1:76263000-76289000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:76263000-76296200	Weak transcription	Ovary	ovary
8	chr1:76263200-76277000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:76263400-76289000	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:76263600-76284000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr1:76264000-76277000	Weak transcription	HUVEC	blood vessel
12	chr1:76264200-76279800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:76264200-76291400	Weak transcription	Psoas Muscle	Psoas
14	chr1:76264600-76278000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:76264600-76288600	Weak transcription	Left Ventricle	heart
16	chr1:76264800-76277000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:76264800-76288600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr1:76264800-76288600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr1:76273800-76276600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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