Variant report

Variant	rs574555714
Chromosome Location	chr6:53875224-53875225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758055	chr6:53839373-53996093	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv2759431	chr6:53839373-54007349	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1018062	chr6:53842588-53925192	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv5307	chr6:53874118-53952230	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53868600-53875800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:53873400-53876400	Enhancers	Fetal Intestine Large	intestine
3	chr6:53873400-53876400	Enhancers	Fetal Intestine Small	intestine
4	chr6:53873600-53875800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr6:53873600-53876000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:53873800-53875600	Enhancers	Fetal Heart	heart
7	chr6:53873800-53875800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:53874200-53875800	Enhancers	Liver	Liver
9	chr6:53874200-53875800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:53874200-53876400	Enhancers	Fetal Muscle Leg	muscle
11	chr6:53874400-53875600	Enhancers	Psoas Muscle	Psoas
12	chr6:53874400-53875800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:53874400-53875800	Enhancers	HSMM	muscle
14	chr6:53874400-53876600	Enhancers	HepG2	liver
15	chr6:53874600-53875400	Enhancers	Adipose Nuclei	Adipose
16	chr6:53874600-53875600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:53874800-53875400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:53874800-53875400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:53875000-53875600	Enhancers	Left Ventricle	heart
20	chr6:53875000-53875600	Enhancers	HSMMtube	muscle
21	chr6:53875000-53875600	Enhancers	Osteobl	bone
22	chr6:53875000-53875800	Enhancers	Right Atrium	heart
23	chr6:53875200-53875600	Enhancers	Fetal Muscle Trunk	muscle
24	chr6:53875200-53876200	Enhancers	Small Intestine	intestine
25	chr6:53875200-53876400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:53875200-53876400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:53875200-53876400	Flanking Active TSS	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links