Variant report

Variant	rs5745601
Chromosome Location	chr6:33539693-33539694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33532988..33536659-chr6:33537187..33540995,4	K562	blood:
2	chr6:33527175..33529562-chr6:33537058..33539940,2	K562	blood:
3	chr6:33356979..33359554-chr6:33539289..33540812,2	K562	blood:
4	chr6:33537717..33540253-chr6:33551095..33553614,2	K562	blood:
5	chr6:33375962..33378534-chr6:33537596..33540481,2	K562	blood:
6	chr6:33392929..33396981-chr6:33537285..33540754,6	MCF-7	breast:
7	chr6:33379174..33381010-chr6:33538458..33541414,2	K562	blood:
8	chr6:33521966..33523890-chr6:33538624..33540317,3	MCF-7	breast:
9	chr6:33538231..33539799-chr6:33543255..33545002,2	K562	blood:
10	chr6:33392424..33395335-chr6:33538728..33540669,5	K562	blood:
11	chr6:33257633..33260307-chr6:33537052..33539891,2	K562	blood:
12	chr6:33357812..33359554-chr6:33539312..33540834,2	K562	blood:
13	chr6:33533712..33536819-chr6:33537641..33540205,3	MCF-7	breast:
14	chr6:33537234..33540947-chr6:33547325..33549534,4	K562	blood:
15	chr6:33537267..33540253-chr6:33551095..33553614,3	K562	blood:
16	chr6:33538816..33540942-chr6:33543611..33545834,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000204188	Chromatin interaction
ENSG00000112511	Chromatin interaction
ENSG00000237649	Chromatin interaction
ENSG00000030110	Chromatin interaction
ENSG00000225644	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs9469484	1.00[YRI][hapmap]
rs9469516	1.00[YRI][hapmap]
rs9469517	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33538200-33539800	Flanking Active TSS	Primary hematopoietic stem cells	blood
2	chr6:33538200-33539800	Flanking Active TSS	Dnd41	blood
3	chr6:33538200-33540000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr6:33538400-33539800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr6:33538400-33539800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:33538400-33539800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:33538400-33539800	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr6:33538400-33539800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr6:33538400-33540000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:33538600-33539800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:33538600-33539800	Flanking Active TSS	Liver	Liver
12	chr6:33538600-33539800	Flanking Active TSS	Stomach Smooth Muscle	stomach
13	chr6:33538600-33539800	Flanking Active TSS	K562	blood
14	chr6:33538600-33540000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr6:33538800-33539800	Active TSS	Brain Germinal Matrix	brain
16	chr6:33538800-33540000	Active TSS	Rectal Smooth Muscle	rectum
17	chr6:33539000-33539800	Flanking Active TSS	Primary B cells from peripheral blood	blood
18	chr6:33539200-33539800	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr6:33539200-33539800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
20	chr6:33539200-33539800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:33539200-33539800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:33539200-33539800	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
23	chr6:33539200-33539800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr6:33539200-33539800	Flanking Active TSS	GM12878-XiMat	blood
25	chr6:33539200-33540000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:33539200-33540000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
27	chr6:33539200-33540000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:33539200-33541600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:33539200-33547200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:33539400-33539800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr6:33539400-33539800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:33539400-33539800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr6:33539400-33539800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr6:33539400-33539800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr6:33539400-33539800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:33539400-33539800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:33539400-33539800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr6:33539400-33539800	Enhancers	Gastric	stomach
39	chr6:33539400-33539800	Enhancers	Pancreas	Pancrea
40	chr6:33539400-33539800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
41	chr6:33539400-33539800	Flanking Active TSS	Right Ventricle	heart
42	chr6:33539400-33539800	Flanking Active TSS	Thymus	Thymus
43	chr6:33539400-33540000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:33539400-33540000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr6:33539400-33540000	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr6:33539400-33540000	Flanking Active TSS	Brain Hippocampus Middle	brain
47	chr6:33539400-33540000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
48	chr6:33539400-33540000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:33539400-33540000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr6:33539400-33540200	Flanking Active TSS	Primary T cells from cord blood	blood

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